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The map label for this gene is sigX [H]

Identifier: 187933850

GI number: 187933850

Start: 2786684

End: 2787256

Strand: Reverse

Name: sigX [H]

Synonym: CLL_A2668

Alternate gene names: 187933850

Gene position: 2787256-2786684 (Counterclockwise)

Preceding gene: 187933105

Following gene: 187934643

Centisome position: 73.34

GC content: 28.8

Gene sequence:

>573_bases
ATGGGAACTGTAAATTGTAAAAGAGATGAAGATGAAATTAAAATACCCTTTAAAGAGGTTACTGTTGATAAGTTTACACA
GATCTATGATACATATTATAAACGTGTATTTAAGTATGTCTGTTATCGAATTAATGACCAGCATGAGGCGGAAGAATTAT
GTAGCAAGATCTTTGAAAGAATCATAATAAAATATAGCAGTTTTGGTGGAAATGAGGATAGTTTGGATAGCTGGATTTTT
ACTATAGCAAGAAATACCATCACAGATCATTATAGAAGCAAAACTAAAAGATTTCATTTTTCATTGGACTATATAATTGA
TATGGTATCTCCAAAACCATCTTTGGATGAACTTATTTTAACTAAAGAGAATAACTCCTATTTATTTCAAGCTTTAGGAA
AGTTAAATGAAAGGGAGCGTTCAGTGGTTTCGCTTAAATATGGAGCAGTACTTAAGAATACAGAAATTGCAAAAATAATG
GAATTAAGTGAATCAAATGTTAGTGTTATTCTTTATAGGAGTTTGAAAAAACTTAAAAAAATTTTAGTTAGTGAGGGATT
TAAATATGAATAG

Upstream 100 bases:

>100_bases
TGTAATTACATTATAAGATAAGCTGTACAGGTTAATATAAGACTTAAGGGTTTTAAAAATGAACAGTCTGCAAAATAAAT
TTCATGAAAGAGAGATAGTA

Downstream 100 bases:

>100_bases
AAAATCAGATGAAAATGAATTAAAGCAGATAGAAAATTTACTTATGAATACAGATGTTGACAGTAATAAGTGTGAAGAAA
TTATTTTTAATCGCTTAAAG

Product: specialized sigma subunit of RNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MGTVNCKRDEDEIKIPFKEVTVDKFTQIYDTYYKRVFKYVCYRINDQHEAEELCSKIFERIIIKYSSFGGNEDSLDSWIF
TIARNTITDHYRSKTKRFHFSLDYIIDMVSPKPSLDELILTKENNSYLFQALGKLNERERSVVSLKYGAVLKNTEIAKIM
ELSESNVSVILYRSLKKLKKILVSEGFKYE

Sequences:

>Translated_190_residues
MGTVNCKRDEDEIKIPFKEVTVDKFTQIYDTYYKRVFKYVCYRINDQHEAEELCSKIFERIIIKYSSFGGNEDSLDSWIF
TIARNTITDHYRSKTKRFHFSLDYIIDMVSPKPSLDELILTKENNSYLFQALGKLNERERSVVSLKYGAVLKNTEIAKIM
ELSESNVSVILYRSLKKLKKILVSEGFKYE
>Mature_189_residues
GTVNCKRDEDEIKIPFKEVTVDKFTQIYDTYYKRVFKYVCYRINDQHEAEELCSKIFERIIIKYSSFGGNEDSLDSWIFT
IARNTITDHYRSKTKRFHFSLDYIIDMVSPKPSLDELILTKENNSYLFQALGKLNERERSVVSLKYGAVLKNTEIAKIME
LSESNVSVILYRSLKKLKKILVSEGFKYE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. May be involved in the regulation of iron metabolism [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22392; Mature: 22261

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTVNCKRDEDEIKIPFKEVTVDKFTQIYDTYYKRVFKYVCYRINDQHEAEELCSKIFER
CCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IIIKYSSFGGNEDSLDSWIFTIARNTITDHYRSKTKRFHFSLDYIIDMVSPKPSLDELIL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCEEE
TKENNSYLFQALGKLNERERSVVSLKYGAVLKNTEIAKIMELSESNVSVILYRSLKKLKK
EECCCHHHHHHHHHCCHHHHHHEEEHHCHHHCCCHHHHHHHHCCCCCEEHHHHHHHHHHH
ILVSEGFKYE
HHHHCCCCCC
>Mature Secondary Structure 
GTVNCKRDEDEIKIPFKEVTVDKFTQIYDTYYKRVFKYVCYRINDQHEAEELCSKIFER
CCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IIIKYSSFGGNEDSLDSWIFTIARNTITDHYRSKTKRFHFSLDYIIDMVSPKPSLDELIL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCEEE
TKENNSYLFQALGKLNERERSVVSLKYGAVLKNTEIAKIMELSESNVSVILYRSLKKLKK
EECCCHHHHHHHHHCCHHHHHHEEEHHCHHHCCCHHHHHHHHCCCCCEEHHHHHHHHHHH
ILVSEGFKYE
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 8052622; 9393439 [H]