| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is lytB [H]
Identifier: 187932886
GI number: 187932886
Start: 3415687
End: 3418008
Strand: Reverse
Name: lytB [H]
Synonym: CLL_A3258
Alternate gene names: 187932886
Gene position: 3418008-3415687 (Counterclockwise)
Preceding gene: 187934411
Following gene: 187933828
Centisome position: 89.94
GC content: 31.18
Gene sequence:
>2322_bases ATGATAAAAAGAGCGAATAAGATAACATCATTATTACTAACAGCAGCGGCGGTGACTTCATTAGTTCCAGCAACAGGTGT ACATGCTGCAGATTATAAAAGAATAGAGTCAAAGGACGGTACAGTTTATAGTGCTCAAGCATATAAAGATGGAAACTTTG TTATAGATGGCGATGTAAAAAATGGAGATACTGAAGCAATCTATTTCTTAAAAAATGGAAAGTATACAGAATTAGATGAG GTAGATACTGGTTCTGAATTTAATGGAATATTCAATGAAAAATATCTTGATTTAGATAATGGAGATTATTTCATTGATTT AACTAATGGTAAAGTTTATGATGATGATTTAAGAGATGATGGGGAAGATGATGCAGCAAGTGCATTAAGAAAAAAAATAA AGAATAAAGCAGATGATAGATATTCAGATCATGAAGGTTTAAAGAATGATTTAAAAGAAATTAAAGGTTCAAGATATGGA GAAGCATGGTTTGAAACTAAATATACTGCAGATGATAAAAAGACTAATGGTGGAGATGGAAACACTGCATCTGATTTAAC AGTTTATACAGATATAAAAGGAAATTACATTGATGCTGACTATAATTTAGGAAAAGTTAGAGTAACAGCTAATGGTAAGA GTGTTAGTATAGATAATACTGATAAAGATTTTGATGTTGCAGGTATAAAAAAAGCATTAAATGCAAAAGTTTCAAATCAA GATGTTATAGCACAAGATTCTAACAATATATATAGAAGAGCAACAGTAACAATAGATATTAACTCTTCACTTGTTACAGA AGGACAATTATCAATAAGTGATATACAATCAGCAGTAAATAATGTAGATGGCGTTAATATAGATGGTAGTGTTAAAAAAG CTATAAAAAATGAAGTTGATAAACAAGCTGGTCTAGAAGGAGCAACTATTGAGAGTGTAAAAACAACTGGAGCAGCAGTT GATATAGTTAAAGGTGAAGCTGATAAATTAACAGCAGATTCAATAATGACTCTTCAAGGCATGAAAGATGCTAAAACAAC TTCTTCAACAGGAGTAATAAAAGCAGTTCAAGATACAATAATAAATGCAGCACAAAAGGCATATGATGCAATAACTGGAG ACGAAGCAGCTAAAAATAAGAAGGCTATTGAAGTAGCAAAGTCAATGAAAGAAAAAGTAATAACTGATGCAACTCAAATG CAAAATGCAGTAAATGGAGCTAAAGCTAATAGCACTTCTGATGTTAATATAGAAGAAATTAATGGTATAAAAATAAGTGA GCATGGTGATGTGTTCAAAAAAGCATCTAATGGATCTGTAAGCTTTGAAACAATACAAAAAATATCAAAATCACAAGCTT CTAAAGAGATAGATGGAGCTAAATATTCAAAGAATGTAACTACTTACGTTATATCTGATAAAGATGGTGATAAAGAAGAT TTATTAGGTGGAGAATTCACAGCAGTAGGCGGAAAGCTTGTTGAATATAAGATAGATGGAGATAATATAAATGCTCAAAC TATCGAATTAAAATCAAAAGCTGGACATTACTATACTGATATGTCTAAAGAAGAAGATCAAGATTTAGATAATTCAGAAG CATATGATATAGATGTAGATGGTAACATATGGGCTTTAAATGGAGGATTTATTTATAAATTTGATAATGATGAAGATTGG GACAAGGTCTACAAGGTAGATGGTTCTATGGAAAAATTATCAGTTTATGATAAAAATAATATGGTTACTTGGAACGAAGA TGATGAAGTATATTCAATCATATCAGATAAAGATTCATCAGGAAATGATGGCGATGATAATAATGAGGTTAAAAAAGGTT GGGATAAAGATGACTATGGAAACTGGATATTCTTTGATAATGAAGGAAATCAAGTTAAGCATGAATGGGTTAATGTAAAT GGAACTTATTATTATCTTGATGAATATGGAATAATGCAAGCAAACAAATGGGTAAATCCTTTCGGAAATTGGTACTATTT AAATGCAGATGGATCAATGGCTCATTCAGGATGGTTAAATGATAGAGGAACTTGGTACTATCTAAATGATAGCGGAAACA TGTTAACTGGATGGCAATATATAAATGGATCTTGGTATTTCATGGAACCATCAGGGGCTATGAAGACTGGTTGGATAAAT GATAGAGGAACTTGGTACTATTTAAACAGTAATGGTTCAATGAAAACTGGATGGCTAAATGATAATGGAACATGGTACTA TTTAGATGGTTCAGGTAGAATGCTTTCTAATACAAGTGTAAATGGATATACATTAGGAGCAAATGGGGCTTGGATAAGAT AA
Upstream 100 bases:
>100_bases AAAAAAGATTAATAAAAAGATAAATTTAAATGTAAATCGTACAGGATGAGGTTTAAATTTTAATCTTTAAACACGCATAT CGAAAGGGGAAGGAATATAT
Downstream 100 bases:
>100_bases ATATAATATAAAATCCATGATATTTATACTATGAATAAATAAATTGGATTTAGTAATTTAACTTAATATAATAGTAATAA GTATAGCTCTATTTCATATT
Product: cell wall binding repeat domain protein
Products: NA
Alternate protein names: Murein hydrolase [H]
Number of amino acids: Translated: 773; Mature: 773
Protein sequence:
>773_residues MIKRANKITSLLLTAAAVTSLVPATGVHAADYKRIESKDGTVYSAQAYKDGNFVIDGDVKNGDTEAIYFLKNGKYTELDE VDTGSEFNGIFNEKYLDLDNGDYFIDLTNGKVYDDDLRDDGEDDAASALRKKIKNKADDRYSDHEGLKNDLKEIKGSRYG EAWFETKYTADDKKTNGGDGNTASDLTVYTDIKGNYIDADYNLGKVRVTANGKSVSIDNTDKDFDVAGIKKALNAKVSNQ DVIAQDSNNIYRRATVTIDINSSLVTEGQLSISDIQSAVNNVDGVNIDGSVKKAIKNEVDKQAGLEGATIESVKTTGAAV DIVKGEADKLTADSIMTLQGMKDAKTTSSTGVIKAVQDTIINAAQKAYDAITGDEAAKNKKAIEVAKSMKEKVITDATQM QNAVNGAKANSTSDVNIEEINGIKISEHGDVFKKASNGSVSFETIQKISKSQASKEIDGAKYSKNVTTYVISDKDGDKED LLGGEFTAVGGKLVEYKIDGDNINAQTIELKSKAGHYYTDMSKEEDQDLDNSEAYDIDVDGNIWALNGGFIYKFDNDEDW DKVYKVDGSMEKLSVYDKNNMVTWNEDDEVYSIISDKDSSGNDGDDNNEVKKGWDKDDYGNWIFFDNEGNQVKHEWVNVN GTYYYLDEYGIMQANKWVNPFGNWYYLNADGSMAHSGWLNDRGTWYYLNDSGNMLTGWQYINGSWYFMEPSGAMKTGWIN DRGTWYYLNSNGSMKTGWLNDNGTWYYLDGSGRMLSNTSVNGYTLGANGAWIR
Sequences:
>Translated_773_residues MIKRANKITSLLLTAAAVTSLVPATGVHAADYKRIESKDGTVYSAQAYKDGNFVIDGDVKNGDTEAIYFLKNGKYTELDE VDTGSEFNGIFNEKYLDLDNGDYFIDLTNGKVYDDDLRDDGEDDAASALRKKIKNKADDRYSDHEGLKNDLKEIKGSRYG EAWFETKYTADDKKTNGGDGNTASDLTVYTDIKGNYIDADYNLGKVRVTANGKSVSIDNTDKDFDVAGIKKALNAKVSNQ DVIAQDSNNIYRRATVTIDINSSLVTEGQLSISDIQSAVNNVDGVNIDGSVKKAIKNEVDKQAGLEGATIESVKTTGAAV DIVKGEADKLTADSIMTLQGMKDAKTTSSTGVIKAVQDTIINAAQKAYDAITGDEAAKNKKAIEVAKSMKEKVITDATQM QNAVNGAKANSTSDVNIEEINGIKISEHGDVFKKASNGSVSFETIQKISKSQASKEIDGAKYSKNVTTYVISDKDGDKED LLGGEFTAVGGKLVEYKIDGDNINAQTIELKSKAGHYYTDMSKEEDQDLDNSEAYDIDVDGNIWALNGGFIYKFDNDEDW DKVYKVDGSMEKLSVYDKNNMVTWNEDDEVYSIISDKDSSGNDGDDNNEVKKGWDKDDYGNWIFFDNEGNQVKHEWVNVN GTYYYLDEYGIMQANKWVNPFGNWYYLNADGSMAHSGWLNDRGTWYYLNDSGNMLTGWQYINGSWYFMEPSGAMKTGWIN DRGTWYYLNSNGSMKTGWLNDNGTWYYLDGSGRMLSNTSVNGYTLGANGAWIR >Mature_773_residues MIKRANKITSLLLTAAAVTSLVPATGVHAADYKRIESKDGTVYSAQAYKDGNFVIDGDVKNGDTEAIYFLKNGKYTELDE VDTGSEFNGIFNEKYLDLDNGDYFIDLTNGKVYDDDLRDDGEDDAASALRKKIKNKADDRYSDHEGLKNDLKEIKGSRYG EAWFETKYTADDKKTNGGDGNTASDLTVYTDIKGNYIDADYNLGKVRVTANGKSVSIDNTDKDFDVAGIKKALNAKVSNQ DVIAQDSNNIYRRATVTIDINSSLVTEGQLSISDIQSAVNNVDGVNIDGSVKKAIKNEVDKQAGLEGATIESVKTTGAAV DIVKGEADKLTADSIMTLQGMKDAKTTSSTGVIKAVQDTIINAAQKAYDAITGDEAAKNKKAIEVAKSMKEKVITDATQM QNAVNGAKANSTSDVNIEEINGIKISEHGDVFKKASNGSVSFETIQKISKSQASKEIDGAKYSKNVTTYVISDKDGDKED LLGGEFTAVGGKLVEYKIDGDNINAQTIELKSKAGHYYTDMSKEEDQDLDNSEAYDIDVDGNIWALNGGFIYKFDNDEDW DKVYKVDGSMEKLSVYDKNNMVTWNEDDEVYSIISDKDSSGNDGDDNNEVKKGWDKDDYGNWIFFDNEGNQVKHEWVNVN GTYYYLDEYGIMQANKWVNPFGNWYYLNADGSMAHSGWLNDRGTWYYLNDSGNMLTGWQYINGSWYFMEPSGAMKTGWIN DRGTWYYLNSNGSMKTGWLNDNGTWYYLDGSGRMLSNTSVNGYTLGANGAWIR
Specific function: Plays an important role in cell wall degradation and cell separation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 13 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR013338 - InterPro: IPR002901 [H]
Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]
EC number: =3.2.1.96 [H]
Molecular weight: Translated: 85364; Mature: 85364
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKRANKITSLLLTAAAVTSLVPATGVHAADYKRIESKDGTVYSAQAYKDGNFVIDGDVK CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCEEEECCCC NGDTEAIYFLKNGKYTELDEVDTGSEFNGIFNEKYLDLDNGDYFIDLTNGKVYDDDLRDD CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEEECCCCCCC GEDDAASALRKKIKNKADDRYSDHEGLKNDLKEIKGSRYGEAWFETKYTADDKKTNGGDG CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCCCCCC NTASDLTVYTDIKGNYIDADYNLGKVRVTANGKSVSIDNTDKDFDVAGIKKALNAKVSNQ CCCCCEEEEEECCCCEEECCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCCCC DVIAQDSNNIYRRATVTIDINSSLVTEGQLSISDIQSAVNNVDGVNIDGSVKKAIKNEVD EEEEECCCCEEEEEEEEEEECCCEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH KQAGLEGATIESVKTTGAAVDIVKGEADKLTADSIMTLQGMKDAKTTSSTGVIKAVQDTI HHHCCCCCEEHHEECCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH INAAQKAYDAITGDEAAKNKKAIEVAKSMKEKVITDATQMQNAVNGAKANSTSDVNIEEI HHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC NGIKISEHGDVFKKASNGSVSFETIQKISKSQASKEIDGAKYSKNVTTYVISDKDGDKED CCEEEECCCCHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCCCHHH LLGGEFTAVGGKLVEYKIDGDNINAQTIELKSKAGHYYTDMSKEEDQDLDNSEAYDIDVD CCCCEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCEEEECC GNIWALNGGFIYKFDNDEDWDKVYKVDGSMEKLSVYDKNNMVTWNEDDEVYSIISDKDSS CCEEEEECCEEEEECCCCCCCCEEEECCCCEEEEEEECCCEEEECCCCCEEEEEECCCCC GNDGDDNNEVKKGWDKDDYGNWIFFDNEGNQVKHEWVNVNGTYYYLDEYGIMQANKWVNP CCCCCCCCHHHCCCCCCCCCCEEEECCCCCEEEEEEEEECCEEEEEECCCEEECCCCCCC FGNWYYLNADGSMAHSGWLNDRGTWYYLNDSGNMLTGWQYINGSWYFMEPSGAMKTGWIN CCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCEEEEECCCCCEEECEEC DRGTWYYLNSNGSMKTGWLNDNGTWYYLDGSGRMLSNTSVNGYTLGANGAWIR CCCEEEEECCCCCEEEEEECCCCEEEEECCCCCEEECCCCCCEEECCCCCCCC >Mature Secondary Structure MIKRANKITSLLLTAAAVTSLVPATGVHAADYKRIESKDGTVYSAQAYKDGNFVIDGDVK CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCEEEECCCC NGDTEAIYFLKNGKYTELDEVDTGSEFNGIFNEKYLDLDNGDYFIDLTNGKVYDDDLRDD CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEEECCCCCCC GEDDAASALRKKIKNKADDRYSDHEGLKNDLKEIKGSRYGEAWFETKYTADDKKTNGGDG CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCCCCCC NTASDLTVYTDIKGNYIDADYNLGKVRVTANGKSVSIDNTDKDFDVAGIKKALNAKVSNQ CCCCCEEEEEECCCCEEECCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCCCC DVIAQDSNNIYRRATVTIDINSSLVTEGQLSISDIQSAVNNVDGVNIDGSVKKAIKNEVD EEEEECCCCEEEEEEEEEEECCCEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH KQAGLEGATIESVKTTGAAVDIVKGEADKLTADSIMTLQGMKDAKTTSSTGVIKAVQDTI HHHCCCCCEEHHEECCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH INAAQKAYDAITGDEAAKNKKAIEVAKSMKEKVITDATQMQNAVNGAKANSTSDVNIEEI HHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC NGIKISEHGDVFKKASNGSVSFETIQKISKSQASKEIDGAKYSKNVTTYVISDKDGDKED CCEEEECCCCHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCCCHHH LLGGEFTAVGGKLVEYKIDGDNINAQTIELKSKAGHYYTDMSKEEDQDLDNSEAYDIDVD CCCCEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCEEEECC GNIWALNGGFIYKFDNDEDWDKVYKVDGSMEKLSVYDKNNMVTWNEDDEVYSIISDKDSS CCEEEEECCEEEEECCCCCCCCEEEECCCCEEEEEEECCCEEEECCCCCEEEEEECCCCC GNDGDDNNEVKKGWDKDDYGNWIFFDNEGNQVKHEWVNVNGTYYYLDEYGIMQANKWVNP CCCCCCCCHHHCCCCCCCCCCEEEECCCCCEEEEEEEEECCEEEEEECCCEEECCCCCCC FGNWYYLNADGSMAHSGWLNDRGTWYYLNDSGNMLTGWQYINGSWYFMEPSGAMKTGWIN CCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCEEEEECCCCCEEECEEC DRGTWYYLNSNGSMKTGWLNDNGTWYYLDGSGRMLSNTSVNGYTLGANGAWIR CCCEEEEECCCCCEEEEEECCCCEEEEECCCCCEEECCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11463916 [H]