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The map label for this gene is yocH [H]

Identifier: 187932594

GI number: 187932594

Start: 3353302

End: 3353745

Strand: Reverse

Name: yocH [H]

Synonym: CLL_A3217

Alternate gene names: 187932594

Gene position: 3353745-3353302 (Counterclockwise)

Preceding gene: 187933328

Following gene: 187935526

Centisome position: 88.25

GC content: 34.91

Gene sequence:

>444_bases
ATGTTAAAGAGACGCAGTGATATAACATTTATTAAAAATCTTAAGAAAAAGGTTGGCGTAGTCATAATGGCTACAATGAG
TATTTGTATATTTACAACTACTTTTGTTAACAATGAGGTACAAGCATTTGTTTCTAGTAAAACAGATCAGAATATCGAAA
TGATATGTCCGTCTACGGCATATTCTTCAGGTGGGATGACAGCTAGCGGAATTCAATGCGTAAGGAATCCAAATGGCATT
AGCACAATTTCAGTTGATCCAAGTGTATTTCCTTATGGTTCAATTTTATATATAGAGGGATATGGTTATGCTGTTGCAGC
TGACAGTGGGGCAGCTATAAAAGGAAACAAGATAGATGTATATTTTAACAGTGATGAAGAATGCTGTGAGTGGGGAGTAA
GAGATGTAAAAGTTACATGCCTTGGAGATTCTTCAAGAAAATAA

Upstream 100 bases:

>100_bases
ATTTATTAAATTTATATTATGTATATGTTTACATTAGAACGTTACATAAAAATGTGATATAATGGAAAATGTAATATAAA
AATACAAAAGGAGAGATGGG

Downstream 100 bases:

>100_bases
AAAATTATAGACATAAAAATGACTAAGGAATGTCAATATTTCTTAGTTATTTTATTGTAGAAAGAGATTACAAATTTTTT
TATGTTAATTTCAACTAACA

Product: 3D domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MLKRRSDITFIKNLKKKVGVVIMATMSICIFTTTFVNNEVQAFVSSKTDQNIEMICPSTAYSSGGMTASGIQCVRNPNGI
STISVDPSVFPYGSILYIEGYGYAVAADSGAAIKGNKIDVYFNSDEECCEWGVRDVKVTCLGDSSRK

Sequences:

>Translated_147_residues
MLKRRSDITFIKNLKKKVGVVIMATMSICIFTTTFVNNEVQAFVSSKTDQNIEMICPSTAYSSGGMTASGIQCVRNPNGI
STISVDPSVFPYGSILYIEGYGYAVAADSGAAIKGNKIDVYFNSDEECCEWGVRDVKVTCLGDSSRK
>Mature_147_residues
MLKRRSDITFIKNLKKKVGVVIMATMSICIFTTTFVNNEVQAFVSSKTDQNIEMICPSTAYSSGGMTASGIQCVRNPNGI
STISVDPSVFPYGSILYIEGYGYAVAADSGAAIKGNKIDVYFNSDEECCEWGVRDVKVTCLGDSSRK

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 15938; Mature: 15938

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRRSDITFIKNLKKKVGVVIMATMSICIFTTTFVNNEVQAFVSSKTDQNIEMICPSTA
CCCCCCCHHHHHHHHHHHCEEEEHHHHEEHEEEECCCCHHEEEECCCCCCCEEEEECCCC
YSSGGMTASGIQCVRNPNGISTISVDPSVFPYGSILYIEGYGYAVAADSGAAIKGNKIDV
CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCEEEEECCCCEEECCEEEE
YFNSDEECCEWGVRDVKVTCLGDSSRK
EECCCHHHHHCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MLKRRSDITFIKNLKKKVGVVIMATMSICIFTTTFVNNEVQAFVSSKTDQNIEMICPSTA
CCCCCCCHHHHHHHHHHHCEEEEHHHHEEHEEEECCCCHHEEEECCCCCCCEEEEECCCC
YSSGGMTASGIQCVRNPNGISTISVDPSVFPYGSILYIEGYGYAVAADSGAAIKGNKIDV
CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCEEEEECCCCEEECCEEEE
YFNSDEECCEWGVRDVKVTCLGDSSRK
EECCCHHHHHCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]