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The map label for this gene is licC [H]

Identifier: 187932580

GI number: 187932580

Start: 3325939

End: 3326637

Strand: Reverse

Name: licC [H]

Synonym: CLL_A3198

Alternate gene names: 187932580

Gene position: 3326637-3325939 (Counterclockwise)

Preceding gene: 187933046

Following gene: 187933874

Centisome position: 87.54

GC content: 26.47

Gene sequence:

>699_bases
ATGAGAGCAATATTAGTAGCAGCGGGGATGGGTACTAGACTTAGACCACTTACAAATACAATACCAAAGTCCTTAGTTGA
GGTTAATGGAATTTCATTACTTGAAAGACAAATAATAAATTTAAAAGAGATAGGGATAGATGAGATTGTAGTTTTGACTG
GATATTTACATGAAAAGTTTGATGGCTTAGTTAAAAAATATGATTTAGTTAAGATAGTTAATGATAAATATGATGTTTAT
AATAATATTTATACAATGTATTTAGCAAAAGAATATCTTCAAGATACATTTGTTATAGATGCAGATAATTATATTAATAA
AAACTTTTTACCAAGGAATAGACCAGAACATTCAGAGTATTATTCTGCTTGTAAGGAAAGTATTGTTGGTGAGTGGATAT
TAAGATATGATGAAAATGATAAATTACAAAGAGTTGATATAGGAAAAGAGGGGGATGAACCTTCTTATATAATGTCAGGA
GCATCTTATTGGAGTGAAAAAGACGGAAAAATTATAGCACAAAAAATAGATGAAAAAGTTAATAGTGGAGATTTTGAAAA
TTTATATTGGGATGATATAGTTGTTGAAAATCTTAAAGATTTAGATGTTTATGTTAATAAAATAGGATCTAATGATATTT
TTGAAATAGATTCTCTTGAAGATTTAGAATATCTAAAAAATAAGCTTAGTATAAGATAA

Upstream 100 bases:

>100_bases
ATGAAGGCGATGATTTTGGTACCTATGGAATAGATAGATATAATAGGGGAAAAGAAAATTTAAATAAACTAGAAGCTGAA
TTTTAAGGAGAGAAAAACAT

Downstream 100 bases:

>100_bases
ATACATATTTTAAATATGTATTTATCTTATAAAAATTTCAAATTCAGCACCATTATTCCTGCACTGAGTTTGGAAATGGT
ACATGGCTAAAAAACCGATA

Product: LicC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MRAILVAAGMGTRLRPLTNTIPKSLVEVNGISLLERQIINLKEIGIDEIVVLTGYLHEKFDGLVKKYDLVKIVNDKYDVY
NNIYTMYLAKEYLQDTFVIDADNYINKNFLPRNRPEHSEYYSACKESIVGEWILRYDENDKLQRVDIGKEGDEPSYIMSG
ASYWSEKDGKIIAQKIDEKVNSGDFENLYWDDIVVENLKDLDVYVNKIGSNDIFEIDSLEDLEYLKNKLSIR

Sequences:

>Translated_232_residues
MRAILVAAGMGTRLRPLTNTIPKSLVEVNGISLLERQIINLKEIGIDEIVVLTGYLHEKFDGLVKKYDLVKIVNDKYDVY
NNIYTMYLAKEYLQDTFVIDADNYINKNFLPRNRPEHSEYYSACKESIVGEWILRYDENDKLQRVDIGKEGDEPSYIMSG
ASYWSEKDGKIIAQKIDEKVNSGDFENLYWDDIVVENLKDLDVYVNKIGSNDIFEIDSLEDLEYLKNKLSIR
>Mature_232_residues
MRAILVAAGMGTRLRPLTNTIPKSLVEVNGISLLERQIINLKEIGIDEIVVLTGYLHEKFDGLVKKYDLVKIVNDKYDVY
NNIYTMYLAKEYLQDTFVIDADNYINKNFLPRNRPEHSEYYSACKESIVGEWILRYDENDKLQRVDIGKEGDEPSYIMSG
ASYWSEKDGKIIAQKIDEKVNSGDFENLYWDDIVVENLKDLDVYVNKIGSNDIFEIDSLEDLEYLKNKLSIR

Specific function: Unknown

COG id: COG4750

COG function: function code M; CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017189
- InterPro:   IPR005835 [H]

Pfam domain/function: PF00483 NTP_transferase [H]

EC number: NA

Molecular weight: Translated: 26900; Mature: 26900

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAILVAAGMGTRLRPLTNTIPKSLVEVNGISLLERQIINLKEIGIDEIVVLTGYLHEKF
CCEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH
DGLVKKYDLVKIVNDKYDVYNNIYTMYLAKEYLQDTFVIDADNYINKNFLPRNRPEHSEY
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHH
YSACKESIVGEWILRYDENDKLQRVDIGKEGDEPSYIMSGASYWSEKDGKIIAQKIDEKV
HHHHHHHHHHHHHHEECCCCCEEEEECCCCCCCCCEEECCHHHCCCCCCCHHHHHHHHHH
NSGDFENLYWDDIVVENLKDLDVYVNKIGSNDIFEIDSLEDLEYLKNKLSIR
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRAILVAAGMGTRLRPLTNTIPKSLVEVNGISLLERQIINLKEIGIDEIVVLTGYLHEKF
CCEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH
DGLVKKYDLVKIVNDKYDVYNNIYTMYLAKEYLQDTFVIDADNYINKNFLPRNRPEHSEY
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHH
YSACKESIVGEWILRYDENDKLQRVDIGKEGDEPSYIMSGASYWSEKDGKIIAQKIDEKV
HHHHHHHHHHHHHHEECCCCCEEEEECCCCCCCCCEEECCHHHCCCCCCCHHHHHHHHHH
NSGDFENLYWDDIVVENLKDLDVYVNKIGSNDIFEIDSLEDLEYLKNKLSIR
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800 [H]