Definition | Borrelia hermsii DAH chromosome, complete genome. |
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Accession | NC_010673 |
Length | 922,307 |
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The map label for this gene is 187918281
Identifier: 187918281
GI number: 187918281
Start: 429914
End: 431122
Strand: Direct
Name: 187918281
Synonym: BH0416
Alternate gene names: NA
Gene position: 429914-431122 (Clockwise)
Preceding gene: 187918280
Following gene: 187918282
Centisome position: 46.61
GC content: 30.19
Gene sequence:
>1209_bases TTGGACATCAAAAAAGAGAACACTGAGGATTGCTTTTCACATGTCAGCACTCTTGACGTAGACCATTACAAAATATACAT ACTAGGAACAGCGCATGTATCAAAAAAGAGCTCACAAGATACAGCTACTTTAATTGAGACATTAAAGCCAAACTTTATTG CCGTTGAACTTGATGAGGCTCGTTACCACGCAATTCTAAAAACAGATGAAAATGAAAAATGGCGCAATTTAGACATATAT AAAGTAATAAAACAAGGAAAAGCATTTTTACTAATAGTACAGATCATTTTAAGTAATTTTCAAAAAAAATTAGCAAAAGA ACAAGGGATTAATCCTGGCGAAGAGATGAAAACAGCCATTTTAAAAGCTAAAGAGCACAATATACCGTTAATACTTGTAG ACAGAAAAGTTGAGACAACCCTAAAGAGGGCCTGGAATTGTGTCCCAATTTTTGAAAAAGTCAAAATAATATCAAGCTTG TTTTCATTCTCAGACGTAAAAGTCACACAAGATGAAATTGAAAAACTCAAAGAACAAGATGTTCTATCAAATATGATGGG AGAACTTGCAAAAGAAATTCCTACTGTAAAAAAAGTTTTAATTGATGAGAGAGATGAATTTATAGCAAGCAAGATACTTG AAGGCTCAGGAACAATTCTTGCTGTTGTTGGTGCTGGTCATGTAAAGGGAATAATAGCAAATTTAAAAGAAATTAAAGAA AATAAAAAAATTATTAACATCAATGAGCTAAATACCATACCTAAGAATACTTTTTCCATAAGCAAATTAATATCTTACTT TATAGCAATCTCAATTGTTATACTAATGGCAAGCTCATTCTACTTTAAAGGCTTTGATTTAGCTTACAAAAATTTAAAGT TTTGGATAATATGTAATTCTTTATTTGCAGGTCTTGCTGCTCTTTTACTAAGAGCCAATATTATAACGATACTAACAGCA TCAATTGGAGCTCCAATATTTTCCTTAATTCCATTTATTGGAACGGGTATGGTTGCAGGTCTTGTTGAAGCTTATATAAA TAAACCAAAAATAAAAGATTTTGAAAATCTACAAGAAGATTTGAATAACATAAAAGGATATTTTAAGAACAAAGTTACAA AAATCTTATTAATAGTATTTTTCGTAAACATTGGGTCTGCAATTGGAACAATTGTTGGATTTCAATTCTTGTTAAATATT TTTAGCTAA
Upstream 100 bases:
>100_bases AAGAAAATAATGTAGACTATATAGTTTCAATAAGTCATGTGGTAAAATTATTAAAAGCCATCCTTATTGATGGTTAAATT TTTAAAAACAAGGATAACCT
Downstream 100 bases:
>100_bases ATACCAAAAAGAAAAATAAAAATATACAGGAGTCACATTATGAAGCTTGTTTTTTTAGGGCCCCCGGGTTCTGGAAAAGG TACAATTGCCAAGATCCTCT
Product: pheromone shutdown protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MDIKKENTEDCFSHVSTLDVDHYKIYILGTAHVSKKSSQDTATLIETLKPNFIAVELDEARYHAILKTDENEKWRNLDIY KVIKQGKAFLLIVQIILSNFQKKLAKEQGINPGEEMKTAILKAKEHNIPLILVDRKVETTLKRAWNCVPIFEKVKIISSL FSFSDVKVTQDEIEKLKEQDVLSNMMGELAKEIPTVKKVLIDERDEFIASKILEGSGTILAVVGAGHVKGIIANLKEIKE NKKIININELNTIPKNTFSISKLISYFIAISIVILMASSFYFKGFDLAYKNLKFWIICNSLFAGLAALLLRANIITILTA SIGAPIFSLIPFIGTGMVAGLVEAYINKPKIKDFENLQEDLNNIKGYFKNKVTKILLIVFFVNIGSAIGTIVGFQFLLNI FS
Sequences:
>Translated_402_residues MDIKKENTEDCFSHVSTLDVDHYKIYILGTAHVSKKSSQDTATLIETLKPNFIAVELDEARYHAILKTDENEKWRNLDIY KVIKQGKAFLLIVQIILSNFQKKLAKEQGINPGEEMKTAILKAKEHNIPLILVDRKVETTLKRAWNCVPIFEKVKIISSL FSFSDVKVTQDEIEKLKEQDVLSNMMGELAKEIPTVKKVLIDERDEFIASKILEGSGTILAVVGAGHVKGIIANLKEIKE NKKIININELNTIPKNTFSISKLISYFIAISIVILMASSFYFKGFDLAYKNLKFWIICNSLFAGLAALLLRANIITILTA SIGAPIFSLIPFIGTGMVAGLVEAYINKPKIKDFENLQEDLNNIKGYFKNKVTKILLIVFFVNIGSAIGTIVGFQFLLNI FS >Mature_402_residues MDIKKENTEDCFSHVSTLDVDHYKIYILGTAHVSKKSSQDTATLIETLKPNFIAVELDEARYHAILKTDENEKWRNLDIY KVIKQGKAFLLIVQIILSNFQKKLAKEQGINPGEEMKTAILKAKEHNIPLILVDRKVETTLKRAWNCVPIFEKVKIISSL FSFSDVKVTQDEIEKLKEQDVLSNMMGELAKEIPTVKKVLIDERDEFIASKILEGSGTILAVVGAGHVKGIIANLKEIKE NKKIININELNTIPKNTFSISKLISYFIAISIVILMASSFYFKGFDLAYKNLKFWIICNSLFAGLAALLLRANIITILTA SIGAPIFSLIPFIGTGMVAGLVEAYINKPKIKDFENLQEDLNNIKGYFKNKVTKILLIVFFVNIGSAIGTIVGFQFLLNI FS
Specific function: Unknown
COG id: COG1916
COG function: function code S; Uncharacterized homolog of PrgY (pheromone shutdown protein)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI33342278, Length=288, Percent_Identity=25, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71988206, Length=237, Percent_Identity=28.2700421940928, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71988217, Length=237, Percent_Identity=28.2700421940928, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24646455, Length=203, Percent_Identity=31.5270935960591, Blast_Score=95, Evalue=7e-20, Organism=Drosophila melanogaster, GI21357445, Length=203, Percent_Identity=31.5270935960591, Blast_Score=95, Evalue=7e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002816 - InterPro: IPR005230 [H]
Pfam domain/function: PF01963 TraB [H]
EC number: NA
Molecular weight: Translated: 45152; Mature: 45152
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIKKENTEDCFSHVSTLDVDHYKIYILGTAHVSKKSSQDTATLIETLKPNFIAVELDEA CCCCCCCHHHHHHHHHHCCCCCEEEEEEEECHHCCCCCCHHHHHHHHCCCCEEEEEECCC RYHAILKTDENEKWRNLDIYKVIKQGKAFLLIVQIILSNFQKKLAKEQGINPGEEMKTAI CEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LKAKEHNIPLILVDRKVETTLKRAWNCVPIFEKVKIISSLFSFSDVKVTQDEIEKLKEQD HHHHCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHH VLSNMMGELAKEIPTVKKVLIDERDEFIASKILEGSGTILAVVGAGHVKGIIANLKEIKE HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHC NKKIININELNTIPKNTFSISKLISYFIAISIVILMASSFYFKGFDLAYKNLKFWIICNS CCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEHHH LFAGLAALLLRANIITILTASIGAPIFSLIPFIGTGMVAGLVEAYINKPKIKDFENLQED HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LNNIKGYFKNKVTKILLIVFFVNIGSAIGTIVGFQFLLNIFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MDIKKENTEDCFSHVSTLDVDHYKIYILGTAHVSKKSSQDTATLIETLKPNFIAVELDEA CCCCCCCHHHHHHHHHHCCCCCEEEEEEEECHHCCCCCCHHHHHHHHCCCCEEEEEECCC RYHAILKTDENEKWRNLDIYKVIKQGKAFLLIVQIILSNFQKKLAKEQGINPGEEMKTAI CEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LKAKEHNIPLILVDRKVETTLKRAWNCVPIFEKVKIISSLFSFSDVKVTQDEIEKLKEQD HHHHCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHH VLSNMMGELAKEIPTVKKVLIDERDEFIASKILEGSGTILAVVGAGHVKGIIANLKEIKE HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHC NKKIININELNTIPKNTFSISKLISYFIAISIVILMASSFYFKGFDLAYKNLKFWIICNS CCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEHHH LFAGLAALLLRANIITILTASIGAPIFSLIPFIGTGMVAGLVEAYINKPKIKDFENLQED HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LNNIKGYFKNKVTKILLIVFFVNIGSAIGTIVGFQFLLNIFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]