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The map label for this gene is yfiA

Identifier: 187732959

GI number: 187732959

Start: 3322270

End: 3322557

Strand: Reverse

Name: yfiA

Synonym: SbBS512_E3567

Alternate gene names: 187732959

Gene position: 3322557-3322270 (Counterclockwise)

Preceding gene: 187730690

Following gene: 187733410

Centisome position: 71.98

GC content: 45.14

Gene sequence:

>288_bases
ATGCAGCTCAACATTACCGGAAATCACGTCGAGATCACCGAGGCACTGCGCGAATTTGTTAGAGCCAAATTTGCCAAACT
TGAGCAATATTTTGACCGAATCAACCAGGTCTATGTTGTTCTGAAAGTGGAGAAAGTCACCCACACCTCAGATGCAACAC
TGCATGTAAACGGTGGTGAAATTCATGCCAGCGCGGAAGGTCAGGACATGTACGCTGCCATTGATGGCTTAATTGATAAG
CTGGCACGCCAGTTGACCAAACATAAAGATAAACTGAAACAACACTAA

Upstream 100 bases:

>100_bases
GTGGCACGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAGCTCGTTTGACC
CAACCGATAAGGAAGACACT

Downstream 100 bases:

>100_bases
TTGTCCGGGCAATTAGCATGTGCATGGCGGCCTGTTGTGCGGCACAACGGGCCATTTGTACGGTTAATGCTCCGAGCCTG
TTCCACTGTTTGAGTGGGCA

Product: putative sigma(54) modulation protein

Products: NA

Alternate protein names: ORF3; ORF95 [H]

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MQLNITGNHVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDK
LARQLTKHKDKLKQH

Sequences:

>Translated_95_residues
MQLNITGNHVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDK
LARQLTKHKDKLKQH
>Mature_95_residues
MQLNITGNHVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDK
LARQLTKHKDKLKQH

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=97.8947368421053, Blast_Score=189, Evalue=3e-50,
Organism=Escherichia coli, GI1788949, Length=87, Percent_Identity=40.2298850574713, Blast_Score=68, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 10829; Mature: 10829

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNITGNHVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE
CEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCEEEECCCE
IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLNITGNHVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVEKVTHTSDATLHVNGGE
CEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCEEEECCCE
IHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]