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The map label for this gene is yedW [H]

Identifier: 187732444

GI number: 187732444

Start: 853118

End: 853900

Strand: Direct

Name: yedW [H]

Synonym: SbBS512_E0914

Alternate gene names: 187732444

Gene position: 853118-853900 (Clockwise)

Preceding gene: 187732582

Following gene: 187733083

Centisome position: 18.48

GC content: 42.15

Gene sequence:

>783_bases
ATGAGTTTTGAGGATAGCGAAAAAATGTCCAGGGTAACCTTACAGCAGCATTACAATTTTGTAATGAACCAGGCTGTTTC
TATAACATATGATTTATGGCATATTATTTTCATGAAGATTTTACTTATTGAAGATAATCAAAGGACCCAGGAATGGGTAA
CACAAGGGCTTTCCGAAGCGGGTTATGTCATTGATGCCGTTTCTGATGGCAGAGATGGGCTTTATCTTGCGCTGAAGGAT
GATTATGCATTGATCATTTTGGATATTATGCTTCCGGGTATGGATGGCTGGCAGATCTTACAAACGTTAAGAACAGCAAA
GCAAACCCCTGTTATTTGCCTTACTGCAAGGGATTCTGTCGATGACAGAGTCAGAGGGCTGGACAGTGGAGCAAATGATT
ATCTGGTAAAACCTTTTTCATTTTCTGAGTTGCTGGCAAGGGTTCGGGCACAATTAAGGCAACATCACGCTTTGAATTCA
ACATTAGAAATCAGTGGCTTAAGAATGGACTCTGTAAGTCAAAGTGTGAGCAGGGACAATATCAGTATTACACTGACGCG
CAAGGAGTTTCAGTTACTTTGGCTACTGGCCTCCAGAGCTGGCGAAATTATACCCAGAACGGTTATTGCGAGTGAAATTT
GGGGAATCAACTTTGATAGTGATACCAATACGGTGGATGTCGCCATTCGCAGGCTCCGCGCAAAAGTTGATGATCCTTTT
CCTGAAAAGCTAATCGCCACAATACGGGGGATGGGCTATTCATTCGTAGCGGTAAAAAAATAA

Upstream 100 bases:

>100_bases
TTTGTTGTGCGGCATAAACCAAAGAAGGTAATGAAAATGCTGCCGTTGCTACCGAGAGTACTAAATAACGCTTTAACATG
TTTATATCCTTGTCATGTGA

Downstream 100 bases:

>100_bases
TGAAAAGATTGTCTATAACCGTCCGTTTAACCTTGCTTTTTATATTGCTGCTGTCTGTTGCTGGCGCTGGAATTGTATGG
ACTCTCTATAATGGCCTGGC

Product: transcriptional regulator YedW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSFEDSEKMSRVTLQQHYNFVMNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD
DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNS
TLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPF
PEKLIATIRGMGYSFVAVKK

Sequences:

>Translated_260_residues
MSFEDSEKMSRVTLQQHYNFVMNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD
DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNS
TLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPF
PEKLIATIRGMGYSFVAVKK
>Mature_259_residues
SFEDSEKMSRVTLQQHYNFVMNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNST
LEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFP
EKLIATIRGMGYSFVAVKK

Specific function: Probable member of a two-component regulatory system yedW/yedV [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=99.5515695067265, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1786784, Length=219, Percent_Identity=51.5981735159817, Blast_Score=238, Evalue=4e-64,
Organism=Escherichia coli, GI1790552, Length=222, Percent_Identity=37.8378378378378, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=35.4260089686099, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=36.8181818181818, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=32.7510917030568, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI2367329, Length=234, Percent_Identity=35.4700854700855, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=31.981981981982, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=28.6363636363636, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=33.4841628959276, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=31.0043668122271, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=29.9559471365639, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI145693140, Length=230, Percent_Identity=32.6086956521739, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1788394, Length=223, Percent_Identity=30.0448430493274, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788550, Length=185, Percent_Identity=26.4864864864865, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788713, Length=118, Percent_Identity=30.5084745762712, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR006291
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 29501; Mature: 29370

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFEDSEKMSRVTLQQHYNFVMNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHC
GYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSV
CEEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCH
DDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDN
HHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCC
ISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPF
EEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
PEKLIATIRGMGYSFVAVKK
HHHHHHHHHCCCEEEEEEEC
>Mature Secondary Structure 
SFEDSEKMSRVTLQQHYNFVMNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHC
GYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSV
CEEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCH
DDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDN
HHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCC
ISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPF
EEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
PEKLIATIRGMGYSFVAVKK
HHHHHHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]