Click here to switch to the map view.

The map label for this gene is gcp

Identifier: 187731352

GI number: 187731352

Start: 3250012

End: 3251025

Strand: Reverse

Name: gcp

Synonym: SbBS512_E3498

Alternate gene names: 187731352

Gene position: 3251025-3250012 (Counterclockwise)

Preceding gene: 187730724

Following gene: 187733781

Centisome position: 70.43

GC content: 57.5

Gene sequence:

>1014_bases
ATGCGTGTACTGGGTATTGAAACTTCCTGCGATGAAACCGGCATCGCCATTTACGACGATGAAAAAGGTTTGTTAGCCAA
CCAATTGTATAGTCAGGTGAAATTGCACGCTGACTACGGCGGCGTCGTGCCTGAACTGGCCTCCCGCGATCACGTGCGCA
AAACCGTACCGTTGATCCAGGCGGCGCTAAAGGAGTCTGGCTTAACGGCAAAAGACATTGATGCTGTGGCCTATACCGCA
GGCCCTGGATTAGTCGGCGCACTGCTGGTTGGCGCAACCGTGGGGCGTTCTCTGGCGTTTGCCTGGAACGTTCCGGCAAT
CCCGGTACACCATATGGAAGGGCATCTGTTAGCGCCGATGCTGGAAGATAACCCGCCGGAATTTCCGTTTGTCGCGCTGC
TGGTGTCCGGCGGTCATACGCAGTTAATCAGCGTGACTGGCATTGGTCAGTACGAGCTGCTCGGCGAGTCTATCGATGAT
GCCGCCGGTGAAGCGTTTGATAAAACCGCGAAGCTGCTGGGGCTGGATTATCCTGGCGGACCGTTACTGTCGAAAATGGC
GGCTCAGGGTACTGCCGGGCGCTTTGTTTTCCCGCGTCCGATGACCGACCGTCCGGGGCTGGATTTCAGCTTTTCTGGTC
TGAAAACCTTTGCGGCGAACACGATTCGTGACAACGGCACCGACGACCAGACGCGTGCTGATATCGCCCGCGCCTTTGAA
GATGCGGTGGTCGATACGTTGATGATTAAGTGTAAGCGAGCGTTGGATCAGACGGGCTTTAAGCGACTGGTCATGGCGGG
CGGCGTGAGTGCTAACCGCACGTTACGGGCGAAGCTGGCGGAAATGATGAAAAAACGCCGCGGCGAAGTGTTCTACGCGC
GTCCGGAGTTTTGTACTGATAACGGCGCGATGATCGCCTATGCCGGAATGGTGCGGTTTAAAGCAGGCGCGACGGCGGAT
CTCGGCGTTAGCGTGCGTCCGCGCTGGCCGCTGGCGGAGTTACCGGCTGCGTAA

Upstream 100 bases:

>100_bases
TGAGGAGTATACACGAGGCTTTCTCCAGGGGCGAACAAAGTTTTACATCAACCCGCATTGGTCCTACACTGCGCGGTAAT
AAAGCGAGGTAAAACAAGTC

Downstream 100 bases:

>100_bases
AACTATTGGGTGCCGGAGAGCAATTTCCGGCACCGTCCTCACCTAAAGCAACACCACGGGCATCCACAGTAAGCCGGTAA
TCACCAGCAACACGAGGAAT

Product: putative DNA-binding/iron metalloprotein/AP endonuclease

Products: NA

Alternate protein names: Glycoprotease [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTA
GPGLVGALLVGATVGRSLAFAWNVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTRADIARAFE
DAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATAD
LGVSVRPRWPLAELPAA

Sequences:

>Translated_337_residues
MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTA
GPGLVGALLVGATVGRSLAFAWNVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTRADIARAFE
DAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATAD
LGVSVRPRWPLAELPAA
>Mature_337_residues
MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTA
GPGLVGALLVGATVGRSLAFAWNVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTRADIARAFE
DAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATAD
LGVSVRPRWPLAELPAA

Specific function: Could Be A Metalloprotease. [C]

COG id: COG0533

COG function: function code O; Metal-dependent proteases with possible chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Homo sapiens, GI116812636, Length=356, Percent_Identity=34.8314606741573, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI8923380, Length=332, Percent_Identity=35.5421686746988, Blast_Score=160, Evalue=1e-39,
Organism=Escherichia coli, GI1789445, Length=337, Percent_Identity=99.7032640949555, Blast_Score=683, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17557464, Length=327, Percent_Identity=31.4984709480122, Blast_Score=166, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI71995670, Length=329, Percent_Identity=34.3465045592705, Blast_Score=148, Evalue=3e-36,
Organism=Saccharomyces cerevisiae, GI6320099, Length=366, Percent_Identity=33.3333333333333, Blast_Score=170, Evalue=4e-43,
Organism=Saccharomyces cerevisiae, GI6322891, Length=348, Percent_Identity=28.1609195402299, Blast_Score=121, Evalue=1e-28,
Organism=Drosophila melanogaster, GI20129063, Length=339, Percent_Identity=34.8082595870207, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI21357207, Length=329, Percent_Identity=30.0911854103343, Blast_Score=159, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022450
- InterPro:   IPR000905
- InterPro:   IPR017860
- InterPro:   IPR017861 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: =3.4.24.57 [H]

Molecular weight: Translated: 36008; Mature: 36008

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01016 GLYCOPROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQ
CEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHEEECCCCCCCHHHHCHHHHHHHHHHHH
AALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAWNVPAIPVHHMEGHLLAPM
HHHHHCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCEECCH
LEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPGG
HCCCCCCCCEEEEEEECCCEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
PLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTRADIARAFE
HHHHHHHCCCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
DAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCTD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEECC
NGAMIAYAGMVRFKAGATADLGVSVRPRWPLAELPAA
CCCEEEEEEEEEECCCCCCCCCEEECCCCCHHCCCCC
>Mature Secondary Structure
MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQ
CEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHEEECCCCCCCHHHHCHHHHHHHHHHHH
AALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAWNVPAIPVHHMEGHLLAPM
HHHHHCCCCHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCEECCH
LEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDDAAGEAFDKTAKLLGLDYPGG
HCCCCCCCCEEEEEEECCCEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
PLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFAANTIRDNGTDDQTRADIARAFE
HHHHHHHCCCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
DAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLRAKLAEMMKKRRGEVFYARPEFCTD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEECC
NGAMIAYAGMVRFKAGATADLGVSVRPRWPLAELPAA
CCCEEEEEEEEEECCCCCCCCCEEECCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA