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The map label for this gene is lhgO [H]

Identifier: 187731092

GI number: 187731092

Start: 3003238

End: 3004506

Strand: Reverse

Name: lhgO [H]

Synonym: SbBS512_E3221

Alternate gene names: 187731092

Gene position: 3004506-3003238 (Counterclockwise)

Preceding gene: 187731040

Following gene: 187732176

Centisome position: 65.09

GC content: 57.21

Gene sequence:

>1269_bases
ATGTATGATTTTGTGATTATTGGCGGCGGCATCATCGGCATGTCGACCGCCATGCAACTGATTGATGTTTATCCGGATGC
CCGCATTGCGTTGCTGGAAAAAGAGTCCGGCCCGGCCTGTCACCAGACGGGCCACAACAGCGGCGTGATCCATGCCGGGG
TCTATTACACGCCCGGCAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAC
GACATTCGCTATGACAACTGCGGCAAGATGCTGATCGCCACGTCCGATCTCGAAATGGAACGGATGCGCGCGTTGTGGGA
ACGCACGGCGGCGAACGGTATCGAGCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAACCGAATATCACCGGGC
TCGGCGGCATTTTTGTGCCGTCCAGCGGCATTGTCAGCTATCGCGAAGTCACAGCGGCAATGGCAAAAATCTTCCAGGCC
AGAGGCGGTGAGATTATTTATAACGCCGAAGTCAGCGCCCTCAGTGAGCATAAAAACGGCGTGGTCGTCCGAACCCGTCA
GGGCGGCGAATATGAAGCATCGACGCTGATTAGCTGTTCCGGGCTGATGGCTAACCGGCTGGTGAAAATGCTCGGCCTCG
AACCGGGTTTTATTATCTGCCCGTTCCGTGGCGAGTATTTCCGCCTTGCGCCGGAGCATAACCAGATTGTTAACCATCTG
ATTTACCCCATCCCTGACCCGGCAATGCCGTTTTTGGGCGTGCATCTCACCCGCATGATCGACGGCAGCGTGACCGTCGG
GCCAAACGCGGTGCTGGCTTTTAAACGCGAAGGCTATCGCAAGCGCGACTTCTCATTTAGCGACACGCTGGAAATTTTAG
GCTCGTCGGGGATTCGCCGGGTGCTGCAAAACCATCTACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGC
GGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGC
GCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATG
CGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCAAGGTACAAACGCTGTTGGCAAGCCAG
AGTAACCCCGGACGCACGCTGCGAGCGACACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAA

Upstream 100 bases:

>100_bases
CACCCGGATCTGCGCCGTGAACTGATGCGTCAGCGTGGCTATTTCGCTTACGCCACTCACCACTACCAGACGCATCAGTA
AGCGCAAAGGAATTGAGCGG

Downstream 100 bases:

>100_bases
CCTTTGAAAACAGGACGTAACAATGAAACTTAACGACAGTAACTTATTCCGCCAGCAGGCGTTGATTAACGGGGAATGGC
TGGACGCCAACAATGGCGGG

Product: hydroxyglutarate oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQN
DIRYDNCGKMLIATSDLEMERMRALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL
IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKS
GYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQ
SNPGRTLRATRSVDALHAAFNQ

Sequences:

>Translated_422_residues
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQN
DIRYDNCGKMLIATSDLEMERMRALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL
IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKS
GYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQ
SNPGRTLRATRSVDALHAAFNQ
>Mature_422_residues
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQN
DIRYDNCGKMLIATSDLEMERMRALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL
IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKS
GYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQ
SNPGRTLRATRSVDALHAAFNQ

Specific function: Oxidizes L-2-hydroxyglutarate, probably to recover alpha-ketoglutarate mistakenly reduced by other enzymes or formed during growth on propionate [H]

COG id: COG0579

COG function: function code R; Predicted dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the L2HGDH family [H]

Homologues:

Organism=Homo sapiens, GI13376331, Length=398, Percent_Identity=40.4522613065327, Blast_Score=315, Evalue=7e-86,
Organism=Escherichia coli, GI87082148, Length=422, Percent_Identity=97.39336492891, Blast_Score=840, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565764, Length=401, Percent_Identity=42.14463840399, Blast_Score=329, Evalue=2e-90,
Organism=Drosophila melanogaster, GI24585081, Length=407, Percent_Identity=38.3292383292383, Blast_Score=277, Evalue=1e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015657
- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.3.15 [H]

Molecular weight: Translated: 46155; Mature: 46155

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGS
CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHCCCCCCEEEEEEEECCCC
LKAQFCLAGNRATKAFCDQNDIRYDNCGKMLIATSDLEMERMRALWERTAANGIEREWLN
CEEEEEEECCCHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHCCC
AEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQARGGEIIYNAEVSALSEHKNG
HHHHHHCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCC
VVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL
EEEEECCCCCCCHHHHEEHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCHHHHHHHC
IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRR
CCCCCCCCCHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCHHHHH
VLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEHHE
LFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRATRSVDALHAAF
EEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH
NQ
CC
>Mature Secondary Structure
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGS
CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHCCCCCCEEEEEEEECCCC
LKAQFCLAGNRATKAFCDQNDIRYDNCGKMLIATSDLEMERMRALWERTAANGIEREWLN
CEEEEEEECCCHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHCCC
AEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQARGGEIIYNAEVSALSEHKNG
HHHHHHCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCC
VVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL
EEEEECCCCCCCHHHHEEHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCHHHHHHHC
IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRR
CCCCCCCCCHHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCHHHHH
VLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEHHE
LFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRATRSVDALHAAF
EEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH
NQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]