Click here to switch to the map view.

The map label for this gene is yycB [H]

Identifier: 187736480

GI number: 187736480

Start: 2429606

End: 2430790

Strand: Reverse

Name: yycB [H]

Synonym: Amuc_2000

Alternate gene names: 187736480

Gene position: 2430790-2429606 (Counterclockwise)

Preceding gene: 187736481

Following gene: 187736479

Centisome position: 91.24

GC content: 59.16

Gene sequence:

>1185_bases
ATGGATAAGGCAGGGACTTCCGGAGGCATCAGGGGAAAGATGCTGCTGTTTGTCGCCTTTTTAATCGTGTGCTTCAATTT
GCGTACCGGGTTTGATTCTCCCGATCCGCTGCTGGGAACGATTGAAAGGGATATGGGGCTTTCCCTGGAAAATTCAGGGC
TGTTCGCCCTGTTGCCCGTCTTTGTGCTGGGGGTGGCGGCTCCCATTTCTCCACGCGTGGCGCGCTGGATGACGCCGTGG
AAAATCATTTTCTGGTTCCAGCTTCTGGCGGTGGCCGGAATTTTCTGGCGCAGCTGGGACGGCGTAGCGGGGTTATACGG
CGGCATGGTTCTGATGGGGCTGGGCATGGGAATTGCCGGGGCGGCCATTCCCGGACTGATTAAGCACCAGTTTCCTGACC
ATGCTTCCGCCATGATGGGGGTTTACAGCGCCATGATCGGCGTGGGCAGCGCTGCGGCTTCCGGATTGTCCGTTCCCATT
TCCAACATGCTGGGAGGCTGGCGTTTCGGCCTGGGGGTCTGGATTATCCCCATTCTGCTGGGAATGCTGGTATGGGGCGC
TTATTTTCTCAGGCACCCGGCCGGCGTGTTTCAAAGCGATCCGGCGGCTTCCGGTCACAACCTGCTGCGCAGCGGCAAAG
CATGGCAGGTTACCGTTTTTTACTTGAGCCGCGTTGGGGCGGCCTATTTCTTTTATACTTGGATTCCCATCTTTCTGAGG
CAGCGGGGCATGAGCTATGAGGATGCCGGGTTCATCCTTTCCGTGGCCATGTTCGCCCAGCTGCCCGCCACGCTTTCCGC
ACACGTGCTGGAAAAGGCTACGGGCGGCCGGGGGCTCCTCATCGTGATGGCCATGGCATTGGCGGCCCTTTCCTGCTGGG
GCATCCTGTATCTCCCTCCGGACTGGGCTCTCTGGATGGCTATTCTGTTCGGTCTGGCGACGGGAACCGTATTCAGCCGC
GGAATGGCGCTGATGGTGGAACGGGCCCGGACCCCTTCCGAATCAATCAGGCTTTCCGGCATGTCCCAGGGAATAGGCTT
TACCATGGGCGCCCTGTTGAGCCTGCTGTTTACCTCCTTCCTGCATCAGGGCGGCTCCTTTTTGCCGTTCTGCCTGGTTT
ATACCTTTTTCTGCGTGCTCGGCATGGTTTCCGGCCGCATGTCCGCCCGGCCGGGATACGTGTAA

Upstream 100 bases:

>100_bases
TCCCCTGATGGTCTTTCCGTCATGCCGTGTTTCCGGACCGCTGACAGCCGGAAGGCTGTTACTTTTGAACAGGGGCGGGG
GCAAGGATGTATAACATGGG

Downstream 100 bases:

>100_bases
TTTGCTGGGGAGATTTAATGGTTAAGGATTAGTGACTAGGAAGAGAGGTTCATTGTTCTTTTCCCCCCTTTCCGGGGTCC
GCCATTTTCTTTTGAGTGAC

Product: major facilitator superfamily MFS_1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MDKAGTSGGIRGKMLLFVAFLIVCFNLRTGFDSPDPLLGTIERDMGLSLENSGLFALLPVFVLGVAAPISPRVARWMTPW
KIIFWFQLLAVAGIFWRSWDGVAGLYGGMVLMGLGMGIAGAAIPGLIKHQFPDHASAMMGVYSAMIGVGSAAASGLSVPI
SNMLGGWRFGLGVWIIPILLGMLVWGAYFLRHPAGVFQSDPAASGHNLLRSGKAWQVTVFYLSRVGAAYFFYTWIPIFLR
QRGMSYEDAGFILSVAMFAQLPATLSAHVLEKATGGRGLLIVMAMALAALSCWGILYLPPDWALWMAILFGLATGTVFSR
GMALMVERARTPSESIRLSGMSQGIGFTMGALLSLLFTSFLHQGGSFLPFCLVYTFFCVLGMVSGRMSARPGYV

Sequences:

>Translated_394_residues
MDKAGTSGGIRGKMLLFVAFLIVCFNLRTGFDSPDPLLGTIERDMGLSLENSGLFALLPVFVLGVAAPISPRVARWMTPW
KIIFWFQLLAVAGIFWRSWDGVAGLYGGMVLMGLGMGIAGAAIPGLIKHQFPDHASAMMGVYSAMIGVGSAAASGLSVPI
SNMLGGWRFGLGVWIIPILLGMLVWGAYFLRHPAGVFQSDPAASGHNLLRSGKAWQVTVFYLSRVGAAYFFYTWIPIFLR
QRGMSYEDAGFILSVAMFAQLPATLSAHVLEKATGGRGLLIVMAMALAALSCWGILYLPPDWALWMAILFGLATGTVFSR
GMALMVERARTPSESIRLSGMSQGIGFTMGALLSLLFTSFLHQGGSFLPFCLVYTFFCVLGMVSGRMSARPGYV
>Mature_394_residues
MDKAGTSGGIRGKMLLFVAFLIVCFNLRTGFDSPDPLLGTIERDMGLSLENSGLFALLPVFVLGVAAPISPRVARWMTPW
KIIFWFQLLAVAGIFWRSWDGVAGLYGGMVLMGLGMGIAGAAIPGLIKHQFPDHASAMMGVYSAMIGVGSAAASGLSVPI
SNMLGGWRFGLGVWIIPILLGMLVWGAYFLRHPAGVFQSDPAASGHNLLRSGKAWQVTVFYLSRVGAAYFFYTWIPIFLR
QRGMSYEDAGFILSVAMFAQLPATLSAHVLEKATGGRGLLIVMAMALAALSCWGILYLPPDWALWMAILFGLATGTVFSR
GMALMVERARTPSESIRLSGMSQGIGFTMGALLSLLFTSFLHQGGSFLPFCLVYTFFCVLGMVSGRMSARPGYV

Specific function: Unknown

COG id: COG2807

COG function: function code P; Cyanate permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Cyanate porter (TC 2.A.1.17) family [H]

Homologues:

Organism=Escherichia coli, GI1788092, Length=342, Percent_Identity=27.7777777777778, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1786536, Length=338, Percent_Identity=22.189349112426, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004747
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42405; Mature: 42405

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure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HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]