| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is pheT [H]
Identifier: 187736478
GI number: 187736478
Start: 2425874
End: 2428393
Strand: Reverse
Name: pheT [H]
Synonym: Amuc_1998
Alternate gene names: 187736478
Gene position: 2428393-2425874 (Counterclockwise)
Preceding gene: 187736479
Following gene: 187736477
Centisome position: 91.15
GC content: 62.94
Gene sequence:
>2520_bases ATGAAGATTTCCCTTAACTGGCTTTCCCAGTACATTGACCTGTCCGGCCTGAGCGTGGATGAAATGTCTGACATGCTGAC TTTTGCCGGCATTGAGGTGGAAGACATCCGCCAGCAGGGCGTGGATTCCCCATACGTGGTGGTGGCCCGCGTGGCTTCCG CGGAACAGCATCCCCAGGCGGACCGGCTGAAAGTCTGCCAGGTGGACGTGGGCGACGGCACGCTGCACCAGATTGTGTGC GGCGCTCAGAACTACAAGGTGGGGGACAAGGTCCCCTGCGCCCTGCCGGGAGCGGTGCTGCCCGGCAACGTTGAAATCAA GGTGGGCAAGCTGCGCGGCGTGGAGTCCCGCGGCATGCTCTGTTCCGCCTCCGAGCTGGGGCTTCCCGACAAGGAGCACG GTCTCTGGATTCTCCCTCAGGAACTGGAACCCGGTACGCCGATTTCCCAGGTTGTCAAGGCGGATACCCTGGTGGAAGTG GAAGTAACGCCCAACCGGCCGGATTTGCTTTCCCACAACGGCATGGCGTATGAACTGGCCGCTATCTCCGGCCGGGGGTA CAGGCCTGTTTCCATTGACGACGCCGGAGTGGCGCTGGAACCTGCCGGAGACTTCGTGCGGCTGGACCAGCCGGAGCTGA ACCCGTACTACACCGCCGTAAAAATCAGCGGCGTGAAAGTGCAGGAAAGCCCGGAATGGCTGAAGGAACGCCTGGTAGCC GTCGGCCTGCGCCCCATCAACAACATCGTGGATATTACCAACTTCGTCCTGCATGAACTGGGAACGCCCCTCCATGCCTT TGACGCGGCGAAAGTGCAGGGCGGCATCGTCACCCGCACCGCTTATGAAGGGGAAACCATCAAGGCCCTGGACGGGCAGG AATACACGCTTAACTGCACGGATCTGGTTGTTGCGGACCAGTCCGGCAAGGCGCTCGCCATCGGCGGCGTGATGGGTGGG GAGGAAAGCGGCGTGACGGACGCCACTACGGATATCATTCTGGAGTCCGCCTGGTTCAAGCCCTCCTCCGTCCGCGCCAC GTCCCGCAGGCTGGCCCTGTCCTCCGACTCTTCCTACCGCTTTGAACGCGGCACTTCCGCCTGGAATGTCCTGCGCGGTT CCGTGCGCGCCGTGGAACTGATTCTTCAGCTGGCGGGCGGAACGGCCTCCCCAACGTATGTGGCCGGTTCTCCCGTTCCT AATCCGGCTCATGCTTCCATGCCTTCCTGCGGAGGGGCGGACGGCCCCGTTTCCGTGTTCGCTTCCCTGAAGCAGGGGAA GGGCGCCACGGTGACTAATGAACTGGGCTTTGTACAACTTCCCTGGAAAGCGCTGGATCAGATTTCCGGCGGTTCCATTT CTCATGAGGAAGGGACTCGCATCCTGACGGCGCTGGGCCTGAAGCAGGTTCCGGATTCACCGGAATGCTGGCTGATCCCC CCCCACCGCCTGGATCTCACGCGCCCGTGCGACCTTCTGGAGGAAATCGTGCGCGTTTTCGGCCTGGACGGCATACCGTC CCGCTTCTCCGGCCCCTTCGTGGCGGAATCCCCGGTAGATGTGGCCTATAACTTCCAGATGGAGCTGCGCCGCAAGCTGG CGGCCCTGGGATTTTATGAAACCCAGACCATCAAGCTCATCGCCTCCGAATCCGCGGACGGCACCATCGCCCAGGTGAAG GACGCTTTGCCTCTGCGCCCCCTTCAGGACGGTGACCTCATCCGCGTATCCCTGCCGCTCAGCGAGGATCACTCCGTGCT GCGCCCCGCCCATACGCCCGGCCTGATTGCCGCCGCCGTGCGCAACAGCAACCAGGGCGTTTCCGGCCTGCGCTTCTTTG AACTTGGACGCGTCTTCCGCAATACGGGCGGCGGCAAGGGCAGGGACATTGAAACGGATACCCTGGGTATCCTGGTTTCC GGGGACCGCACGGCGCGTTCCTGGGCGGATCCCAGGCCGGAGCAGGCCTCCTTTGAGGATCTGCTGGCCGTGATGGCGGC TCTGGCGCCGGGCCACCGTTTTACGCTCACGCCTGCCAGACCGCGCGAACAGGCCGCCCTGGGGGCGGACGTACAGCTGG ACGGGAAAGCCTGCGGCTATTTCGCCCGCCTGTCCCTGGCGCGTTGCCGGGAGCTGGGCCTGGGTCAGCCCGTGTACGTG GCGGAACTGGATCTCCGCAAAATGCAGGAAATCCTGACCGCGCCCGTGAAGGCTGCGGAATTGCCCCAGTTTCCCGGTTC TTCCCGCGATGCGGCCATGGAACTGCCCCTCTCCACGCCCAATGCGGACATTGTCAAGGCCGTGGAATCCGCACGGGAAA AACTGCTTGTCAGTTATTTCTGCTTTGACGTGTTCACGGACCCCTCCGGCGAAAAGCTGCCGGCGGACCGCAAATCCATT GCCTATACCTTCCTGTACAGGGATCCGGCCAAGACCCTCACGGCCGCGGAAGTGGATGCAGCGCACCAGCGCGTGCTGAA AGCCCTGACGGACAAAGTGAAGGGCCTTTCCTTCAGGTAA
Upstream 100 bases:
>100_bases TGGCGATGATCCGCTGGGGCATCAGGGACATTCGCGCCCTGATTGAGAATGATGTGCGCTTCCTTGCCCAATTCCAATAA TTTTTACCTGTTTTCCCGTT
Downstream 100 bases:
>100_bases TCCCCGTTAACGGGCCGCGCGTTTCATGGGCTGGAGCGCGCGGCCTGCTTTTCATTTTCCATGCATTTGACTTTCCTGCG CCGCGCGTGCCCGGCCGCCG
Product: phenylalanyl-tRNA synthetase, beta subunit
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 839; Mature: 839
Protein sequence:
>839_residues MKISLNWLSQYIDLSGLSVDEMSDMLTFAGIEVEDIRQQGVDSPYVVVARVASAEQHPQADRLKVCQVDVGDGTLHQIVC GAQNYKVGDKVPCALPGAVLPGNVEIKVGKLRGVESRGMLCSASELGLPDKEHGLWILPQELEPGTPISQVVKADTLVEV EVTPNRPDLLSHNGMAYELAAISGRGYRPVSIDDAGVALEPAGDFVRLDQPELNPYYTAVKISGVKVQESPEWLKERLVA VGLRPINNIVDITNFVLHELGTPLHAFDAAKVQGGIVTRTAYEGETIKALDGQEYTLNCTDLVVADQSGKALAIGGVMGG EESGVTDATTDIILESAWFKPSSVRATSRRLALSSDSSYRFERGTSAWNVLRGSVRAVELILQLAGGTASPTYVAGSPVP NPAHASMPSCGGADGPVSVFASLKQGKGATVTNELGFVQLPWKALDQISGGSISHEEGTRILTALGLKQVPDSPECWLIP PHRLDLTRPCDLLEEIVRVFGLDGIPSRFSGPFVAESPVDVAYNFQMELRRKLAALGFYETQTIKLIASESADGTIAQVK DALPLRPLQDGDLIRVSLPLSEDHSVLRPAHTPGLIAAAVRNSNQGVSGLRFFELGRVFRNTGGGKGRDIETDTLGILVS GDRTARSWADPRPEQASFEDLLAVMAALAPGHRFTLTPARPREQAALGADVQLDGKACGYFARLSLARCRELGLGQPVYV AELDLRKMQEILTAPVKAAELPQFPGSSRDAAMELPLSTPNADIVKAVESAREKLLVSYFCFDVFTDPSGEKLPADRKSI AYTFLYRDPAKTLTAAEVDAAHQRVLKALTDKVKGLSFR
Sequences:
>Translated_839_residues MKISLNWLSQYIDLSGLSVDEMSDMLTFAGIEVEDIRQQGVDSPYVVVARVASAEQHPQADRLKVCQVDVGDGTLHQIVC GAQNYKVGDKVPCALPGAVLPGNVEIKVGKLRGVESRGMLCSASELGLPDKEHGLWILPQELEPGTPISQVVKADTLVEV EVTPNRPDLLSHNGMAYELAAISGRGYRPVSIDDAGVALEPAGDFVRLDQPELNPYYTAVKISGVKVQESPEWLKERLVA VGLRPINNIVDITNFVLHELGTPLHAFDAAKVQGGIVTRTAYEGETIKALDGQEYTLNCTDLVVADQSGKALAIGGVMGG EESGVTDATTDIILESAWFKPSSVRATSRRLALSSDSSYRFERGTSAWNVLRGSVRAVELILQLAGGTASPTYVAGSPVP NPAHASMPSCGGADGPVSVFASLKQGKGATVTNELGFVQLPWKALDQISGGSISHEEGTRILTALGLKQVPDSPECWLIP PHRLDLTRPCDLLEEIVRVFGLDGIPSRFSGPFVAESPVDVAYNFQMELRRKLAALGFYETQTIKLIASESADGTIAQVK DALPLRPLQDGDLIRVSLPLSEDHSVLRPAHTPGLIAAAVRNSNQGVSGLRFFELGRVFRNTGGGKGRDIETDTLGILVS GDRTARSWADPRPEQASFEDLLAVMAALAPGHRFTLTPARPREQAALGADVQLDGKACGYFARLSLARCRELGLGQPVYV AELDLRKMQEILTAPVKAAELPQFPGSSRDAAMELPLSTPNADIVKAVESAREKLLVSYFCFDVFTDPSGEKLPADRKSI AYTFLYRDPAKTLTAAEVDAAHQRVLKALTDKVKGLSFR >Mature_839_residues MKISLNWLSQYIDLSGLSVDEMSDMLTFAGIEVEDIRQQGVDSPYVVVARVASAEQHPQADRLKVCQVDVGDGTLHQIVC GAQNYKVGDKVPCALPGAVLPGNVEIKVGKLRGVESRGMLCSASELGLPDKEHGLWILPQELEPGTPISQVVKADTLVEV EVTPNRPDLLSHNGMAYELAAISGRGYRPVSIDDAGVALEPAGDFVRLDQPELNPYYTAVKISGVKVQESPEWLKERLVA VGLRPINNIVDITNFVLHELGTPLHAFDAAKVQGGIVTRTAYEGETIKALDGQEYTLNCTDLVVADQSGKALAIGGVMGG EESGVTDATTDIILESAWFKPSSVRATSRRLALSSDSSYRFERGTSAWNVLRGSVRAVELILQLAGGTASPTYVAGSPVP NPAHASMPSCGGADGPVSVFASLKQGKGATVTNELGFVQLPWKALDQISGGSISHEEGTRILTALGLKQVPDSPECWLIP PHRLDLTRPCDLLEEIVRVFGLDGIPSRFSGPFVAESPVDVAYNFQMELRRKLAALGFYETQTIKLIASESADGTIAQVK DALPLRPLQDGDLIRVSLPLSEDHSVLRPAHTPGLIAAAVRNSNQGVSGLRFFELGRVFRNTGGGKGRDIETDTLGILVS GDRTARSWADPRPEQASFEDLLAVMAALAPGHRFTLTPARPREQAALGADVQLDGKACGYFARLSLARCRELGLGQPVYV AELDLRKMQEILTAPVKAAELPQFPGSSRDAAMELPLSTPNADIVKAVESAREKLLVSYFCFDVFTDPSGEKLPADRKSI AYTFLYRDPAKTLTAAEVDAAHQRVLKALTDKVKGLSFR
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=849, Percent_Identity=32.2732626619552, Blast_Score=351, Evalue=1e-97,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 90165; Mature: 90165
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKISLNWLSQYIDLSGLSVDEMSDMLTFAGIEVEDIRQQGVDSPYVVVARVASAEQHPQA CEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCC DRLKVCQVDVGDGTLHQIVCGAQNYKVGDKVPCALPGAVLPGNVEIKVGKLRGVESRGML CCEEEEEEECCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCE CSASELGLPDKEHGLWILPQELEPGTPISQVVKADTLVEVEVTPNRPDLLSHNGMAYELA EEHHHCCCCCCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEE AISGRGYRPVSIDDAGVALEPAGDFVRLDQPELNPYYTAVKISGVKVQESPEWLKERLVA EECCCCCCCEEECCCCEEECCCCCEEECCCCCCCCEEEEEEEECEEECCCHHHHHHHHHH VGLRPINNIVDITNFVLHELGTPLHAFDAAKVQGGIVTRTAYEGETIKALDGQEYTLNCT HCCHHHHHHHHHHHHHHHHHCCCHHHHCHHHHCCCEEEEEECCCCEEEEECCCEEEEEEE DLVVADQSGKALAIGGVMGGEESGVTDATTDIILESAWFKPSSVRATSRRLALSSDSSYR EEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHEEEECCCCCCE FERGTSAWNVLRGSVRAVELILQLAGGTASPTYVAGSPVPNPAHASMPSCGGADGPVSVF ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHH ASLKQGKGATVTNELGFVQLPWKALDQISGGSISHEEGTRILTALGLKQVPDSPECWLIP HHHHCCCCCEEECCCCEEEECHHHHHCCCCCCCCCCCCCEEEEHHCHHHCCCCCCEEEEC PHRLDLTRPCDLLEEIVRVFGLDGIPSRFSGPFVAESPVDVAYNFQMELRRKLAALGFYE CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEECHHHHHHHHHHHCCCC TQTIKLIASESADGTIAQVKDALPLRPLQDGDLIRVSLPLSEDHSVLRPAHTPGLIAAAV CEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE RNSNQGVSGLRFFELGRVFRNTGGGKGRDIETDTLGILVSGDRTARSWADPRPEQASFED CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHCCCCCCCCCCCHHH LLAVMAALAPGHRFTLTPARPREQAALGADVQLDGKACGYFARLSLARCRELGLGQPVYV HHHHHHHHCCCCEEEECCCCCHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCEEE AELDLRKMQEILTAPVKAAELPQFPGSSRDAAMELPLSTPNADIVKAVESAREKLLVSYF EHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH CFDVFTDPSGEKLPADRKSIAYTFLYRDPAKTLTAAEVDAAHQRVLKALTDKVKGLSFR HHHHHCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKISLNWLSQYIDLSGLSVDEMSDMLTFAGIEVEDIRQQGVDSPYVVVARVASAEQHPQA CEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEHHHHCCCCCC DRLKVCQVDVGDGTLHQIVCGAQNYKVGDKVPCALPGAVLPGNVEIKVGKLRGVESRGML CCEEEEEEECCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCE CSASELGLPDKEHGLWILPQELEPGTPISQVVKADTLVEVEVTPNRPDLLSHNGMAYELA EEHHHCCCCCCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEE AISGRGYRPVSIDDAGVALEPAGDFVRLDQPELNPYYTAVKISGVKVQESPEWLKERLVA EECCCCCCCEEECCCCEEECCCCCEEECCCCCCCCEEEEEEEECEEECCCHHHHHHHHHH VGLRPINNIVDITNFVLHELGTPLHAFDAAKVQGGIVTRTAYEGETIKALDGQEYTLNCT HCCHHHHHHHHHHHHHHHHHCCCHHHHCHHHHCCCEEEEEECCCCEEEEECCCEEEEEEE DLVVADQSGKALAIGGVMGGEESGVTDATTDIILESAWFKPSSVRATSRRLALSSDSSYR EEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHEEEECCCCCCE FERGTSAWNVLRGSVRAVELILQLAGGTASPTYVAGSPVPNPAHASMPSCGGADGPVSVF ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHH ASLKQGKGATVTNELGFVQLPWKALDQISGGSISHEEGTRILTALGLKQVPDSPECWLIP HHHHCCCCCEEECCCCEEEECHHHHHCCCCCCCCCCCCCEEEEHHCHHHCCCCCCEEEEC PHRLDLTRPCDLLEEIVRVFGLDGIPSRFSGPFVAESPVDVAYNFQMELRRKLAALGFYE CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEECHHHHHHHHHHHCCCC TQTIKLIASESADGTIAQVKDALPLRPLQDGDLIRVSLPLSEDHSVLRPAHTPGLIAAAV CEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE RNSNQGVSGLRFFELGRVFRNTGGGKGRDIETDTLGILVSGDRTARSWADPRPEQASFED CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHCCCCCCCCCCCHHH LLAVMAALAPGHRFTLTPARPREQAALGADVQLDGKACGYFARLSLARCRELGLGQPVYV HHHHHHHHCCCCEEEECCCCCHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCEEE AELDLRKMQEILTAPVKAAELPQFPGSSRDAAMELPLSTPNADIVKAVESAREKLLVSYF EHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH CFDVFTDPSGEKLPADRKSIAYTFLYRDPAKTLTAAEVDAAHQRVLKALTDKVKGLSFR HHHHHCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11889109 [H]