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The map label for this gene is yjdI [H]

Identifier: 187736438

GI number: 187736438

Start: 2372212

End: 2372706

Strand: Reverse

Name: yjdI [H]

Synonym: Amuc_1956

Alternate gene names: 187736438

Gene position: 2372706-2372212 (Counterclockwise)

Preceding gene: 187736448

Following gene: 187736437

Centisome position: 89.06

GC content: 55.76

Gene sequence:

>495_bases
ATGTCCAAAAAGAAGGAGGCAAAGACAAATGCTATGCGCCTGCTGGATGCGCTGCATATCCCGTACAGGCATTATTCCTA
TGAATGCCGCGAGTTTGTGGATGCGCGGCATACGGCGGAAGCACTGAACCTGGCGGAGGAGAAGATGTACAAGACGCTGG
TAACGGAGGGAGCTCCTCGGCAGTATTACGTGTTCGTGATACCCATAGGCGCGGAGCTTTCCTTGAAAAAGGCTGCCCGC
ACCGTGGGAGAAAAGGCTCTTTCCATGCTTCCGGTGAAGGATATTACCGCCGTGACGGGGTACGTGCGCGGCGGCTGCAC
GGCTTTGGGGATGAAAAGGAAATACCCTACGGTGATTGATGCCAGCGCGGAAGCCCTGCCGGAGATGGTGGTGAGCGGCG
GACGTCTGGGGTGCCAGATTGAATTGAATCCTGTGGATTTATGCCGTGCGGCGGAGGGCTTTTTTGCGGATGTGGCGGAT
ATTTCCGTTTCATGA

Upstream 100 bases:

>100_bases
CCGTTTCCGTTCCACTTTTTCATAGGGGCCGTCGGGGGGCTCGGCCTTGTCAAAGGAAGGCTTTTTTTCTATGTTACCGG
GACGTTCCCTTTTCAAGTTT

Downstream 100 bases:

>100_bases
TGGACATCCTGGTTCCGGAAATGCGGAGGGAAGAGGGCAAAAAGCTTTTCCCGGAGGATTTTTTTCTATATTCCTTGCTG
AGGTTCATCCTTCGTCGCCA

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSKKKEAKTNAMRLLDALHIPYRHYSYECREFVDARHTAEALNLAEEKMYKTLVTEGAPRQYYVFVIPIGAELSLKKAAR
TVGEKALSMLPVKDITAVTGYVRGGCTALGMKRKYPTVIDASAEALPEMVVSGGRLGCQIELNPVDLCRAAEGFFADVAD
ISVS

Sequences:

>Translated_164_residues
MSKKKEAKTNAMRLLDALHIPYRHYSYECREFVDARHTAEALNLAEEKMYKTLVTEGAPRQYYVFVIPIGAELSLKKAAR
TVGEKALSMLPVKDITAVTGYVRGGCTALGMKRKYPTVIDASAEALPEMVVSGGRLGCQIELNPVDLCRAAEGFFADVAD
ISVS
>Mature_163_residues
SKKKEAKTNAMRLLDALHIPYRHYSYECREFVDARHTAEALNLAEEKMYKTLVTEGAPRQYYVFVIPIGAELSLKKAART
VGEKALSMLPVKDITAVTGYVRGGCTALGMKRKYPTVIDASAEALPEMVVSGGRLGCQIELNPVDLCRAAEGFFADVADI
SVS

Specific function: May Be Involved In The Suppression Of Transcription Of Usha. [C]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=35.031847133758, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17990; Mature: 17859

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKKEAKTNAMRLLDALHIPYRHYSYECREFVDARHTAEALNLAEEKMYKTLVTEGAPR
CCCCHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QYYVFVIPIGAELSLKKAARTVGEKALSMLPVKDITAVTGYVRGGCTALGMKRKYPTVID
EEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCCEEC
ASAEALPEMVVSGGRLGCQIELNPVDLCRAAEGFFADVADISVS
CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCHHHHHHCEECC
>Mature Secondary Structure 
SKKKEAKTNAMRLLDALHIPYRHYSYECREFVDARHTAEALNLAEEKMYKTLVTEGAPR
CCCHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QYYVFVIPIGAELSLKKAARTVGEKALSMLPVKDITAVTGYVRGGCTALGMKRKYPTVID
EEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCCEEC
ASAEALPEMVVSGGRLGCQIELNPVDLCRAAEGFFADVADISVS
CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCHHHHHHCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]