Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yigM [H]
Identifier: 187736332
GI number: 187736332
Start: 2248025
End: 2248933
Strand: Reverse
Name: yigM [H]
Synonym: Amuc_1849
Alternate gene names: 187736332
Gene position: 2248933-2248025 (Counterclockwise)
Preceding gene: 187736334
Following gene: 187736331
Centisome position: 84.42
GC content: 55.34
Gene sequence:
>909_bases ATGCTCTGCGCCGTGGGCATTGACTTGGTTTTCCTCTCTCCGTATGCTTCCGCCCGCATGCCTGCGTTGCTGCTCACGTC TTTCATTTGGGCGTTGTCATTCGGACTGCTGGGAAATTGCCTGTCCGGACTTCCCGCCAGCTTTGTCGCACTGGCACGCA TGGCCGGTTCATTTGCCGTTTTTCTCCCCTTCGTCCGGAAGGCGCCCCTCAGCCATGCCGTGGGGATGATGGGGATAGGC GCCGTCCAGTTCGGAGGGATGTATCTTTTCTATATCGCTGCCTTCCACTATCTGCCTTCCCACCAGGTTGCCCTTTTTAC AGCCACCACGCCGATTTATGTGGTTCTAATAGACGGCCTGATGAAAAAGAATCTTCCGCCGCTCCATCTGGCGGCGGCTA TTCTTGCAGCCATGGGAGGGGCGGGAATCCTTTGGAAAGGATATTCCTCCGGTAACGGGGAGTTAACAGGAATCGTTCTG GTCCAGCTTTCCAACCTCTGCTTCGCGGCAGGTCAGATAGCCTACATTTCCCTGAAAAATTCCTGGTTCGGGAGAAGCGA AGCATCCTGCTTCGCCTATGCCTATGCAGGCGCCCTGCTGGTTACTCTGCCTTCCGGCCTGCCGTCAGGACTGGCCTGCT GGCAGGGGATTTCAACCGTGCAATGGTGGCTGCTGACCTATTTGGGCGTCATCGCTTCAGGAGTCTGTTTTTTCCTGTGG AATTACGGCGCGCGCCGGGTAACTCCCGTAAAGCTGGCGATTATGAACAATCTCAAGATTCCCCTGGCGGCCATGACTTC CCTGCTCCTGTTCAGGGAGCATTCCAACATGTTCCTTCTGTCCATCGGCTGCCTGCTTATCCTGGCCTCTTTCCTGATCG TCCCTATTTCCTTAAAAAACGACGCATAA
Upstream 100 bases:
>100_bases TTTTCCTGAACACCCCGGAATTCAATATTTCGGGGTGTTTTTATGTTTAGAACCATTATCTTACCCCGTTTTTTGGGTAA TTTTGCATGTTCCCGACTAT
Downstream 100 bases:
>100_bases AATAAATTCCAGACGCCCTATTCCGTCCGAATTGGAGGCCCCGCCATTTAGCAGATTTGGCCAAGGGTGGGCATGACACA TCACATCCGTTTCATTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MLCAVGIDLVFLSPYASARMPALLLTSFIWALSFGLLGNCLSGLPASFVALARMAGSFAVFLPFVRKAPLSHAVGMMGIG AVQFGGMYLFYIAAFHYLPSHQVALFTATTPIYVVLIDGLMKKNLPPLHLAAAILAAMGGAGILWKGYSSGNGELTGIVL VQLSNLCFAAGQIAYISLKNSWFGRSEASCFAYAYAGALLVTLPSGLPSGLACWQGISTVQWWLLTYLGVIASGVCFFLW NYGARRVTPVKLAIMNNLKIPLAAMTSLLLFREHSNMFLLSIGCLLILASFLIVPISLKNDA
Sequences:
>Translated_302_residues MLCAVGIDLVFLSPYASARMPALLLTSFIWALSFGLLGNCLSGLPASFVALARMAGSFAVFLPFVRKAPLSHAVGMMGIG AVQFGGMYLFYIAAFHYLPSHQVALFTATTPIYVVLIDGLMKKNLPPLHLAAAILAAMGGAGILWKGYSSGNGELTGIVL VQLSNLCFAAGQIAYISLKNSWFGRSEASCFAYAYAGALLVTLPSGLPSGLACWQGISTVQWWLLTYLGVIASGVCFFLW NYGARRVTPVKLAIMNNLKIPLAAMTSLLLFREHSNMFLLSIGCLLILASFLIVPISLKNDA >Mature_302_residues MLCAVGIDLVFLSPYASARMPALLLTSFIWALSFGLLGNCLSGLPASFVALARMAGSFAVFLPFVRKAPLSHAVGMMGIG AVQFGGMYLFYIAAFHYLPSHQVALFTATTPIYVVLIDGLMKKNLPPLHLAAAILAAMGGAGILWKGYSSGNGELTGIVL VQLSNLCFAAGQIAYISLKNSWFGRSEASCFAYAYAGALLVTLPSGLPSGLACWQGISTVQWWLLTYLGVIASGVCFFLW NYGARRVTPVKLAIMNNLKIPLAAMTSLLLFREHSNMFLLSIGCLLILASFLIVPISLKNDA
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DUF6 domain [H]
Homologues:
Organism=Escherichia coli, GI1790261, Length=278, Percent_Identity=36.6906474820144, Blast_Score=146, Evalue=1e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004779 - InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32247; Mature: 32247
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLCAVGIDLVFLSPYASARMPALLLTSFIWALSFGLLGNCLSGLPASFVALARMAGSFAV CEEEEEEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH FLPFVRKAPLSHAVGMMGIGAVQFGGMYLFYIAAFHYLPSHQVALFTATTPIYVVLIDGL HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEHEEHHH MKKNLPPLHLAAAILAAMGGAGILWKGYSSGNGELTGIVLVQLSNLCFAAGQIAYISLKN HHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEEHHHHHHHCCCEEEEEEEC SWFGRSEASCFAYAYAGALLVTLPSGLPSGLACWQGISTVQWWLLTYLGVIASGVCFFLW CCCCCCCCHHHHHHHHCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH NYGARRVTPVKLAIMNNLKIPLAAMTSLLLFREHSNMFLLSIGCLLILASFLIVPISLKN HCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHEEEEECC DA CC >Mature Secondary Structure MLCAVGIDLVFLSPYASARMPALLLTSFIWALSFGLLGNCLSGLPASFVALARMAGSFAV CEEEEEEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH FLPFVRKAPLSHAVGMMGIGAVQFGGMYLFYIAAFHYLPSHQVALFTATTPIYVVLIDGL HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEHEEHHH MKKNLPPLHLAAAILAAMGGAGILWKGYSSGNGELTGIVLVQLSNLCFAAGQIAYISLKN HHCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEEHHHHHHHCCCEEEEEEEC SWFGRSEASCFAYAYAGALLVTLPSGLPSGLACWQGISTVQWWLLTYLGVIASGVCFFLW CCCCCCCCHHHHHHHHCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH NYGARRVTPVKLAIMNNLKIPLAAMTSLLLFREHSNMFLLSIGCLLILASFLIVPISLKN HCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHEEEEECC DA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]