Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736263
Identifier: 187736263
GI number: 187736263
Start: 2161994
End: 2164408
Strand: Reverse
Name: 187736263
Synonym: Amuc_1776
Alternate gene names: NA
Gene position: 2164408-2161994 (Counterclockwise)
Preceding gene: 187736264
Following gene: 187736256
Centisome position: 81.24
GC content: 58.39
Gene sequence:
>2415_bases ATGAAAAAACTGCTCGCCATTCTTTCGCTTTTCTTCTGCATGACTGTCACGCTTATGGCTCAGCAGGTGGTTACCACCTG GCTGTCCGATGCCGTTGTGCCGGGAGAACAAACCCGTCTCTTCATCATCCTGACAGACGGAAGCATCGCCCGCCAGGACC CGCTTCCCCGGGTAAAGGGCGCCAGCCTGCGCTGGGTCAGCCAGGGCAACTACATCCGCTGGCCGGGGTCTCCCAACCAA TCCGCCTTCCTGATGGCCATTGAAGTAACGCCGGACGAAGTGGGCACCGTGGAAATCCCTTCCCTGACCCTGCAGGCCAA CAATGGCCGCACTTATACCACGCTTCCCCAGACGCTGACTGTCTACCCTTACAGCGCCATCAAATGGAATACGCTGAACC TGAACGGCACAGCAGTCCCGTACGGCATGCTGTGGCATGTGGACAACCAGAAACCCTATGTCCACCAGCCGGACCGCTGC GAACTGAAAATTTACGCCCCGGAATACATTCTGGAATACACGGCGCCCGCCATCACCACCTCCAACCTGGCTACCTGGCG CTTTGAACCCACGCTGGTGGAACTGCTCCGCGGCCAGCCTCGCGGTTCTGTACTTTACAAAGGCGTCAACTGGAATGTCA TGACCTTCCAGAGCACCCTGTTCCCGCTGCGCGCCGGGGAGGTAACGGCGTCCGGCACTGTCACGGCACGCGCCGCCCTG CCGGAGGCGGACCCTCTCATCGCCAACTTCATCCGTTCGGAAGTACTGGTGGAAATGGCCATTCCGGAAGTGAAAATCAC AGCCCGGGAACTCCCCCCGGGAGCTCCCTCTTCCTTCACCAATGCCGTAGGGAATTTCCGCATCTCCTCCACCACGGATG CGCGGGATCTCAGTGCCAATGAACCCATTACTGTTAAAATCAGGGTAACAGGAACAGGCAATATCCACAGTATCGCCTGC CCGGCCCTCACAGACGCCTCCAACTGGAAACTCTATCCTCCCAACAAGCTGGACCCGGGCCAGAATACGCGCTCCATCCA GGGAACCGTGGAATTTCAGCAAATGATGCGTCCGGTTGCCCAAACGGATGCCATCCCTCCCTTTGAACTCACTTTTTTTG ACCCCAGCACGCAACAGTACAAAACCGTAACCACAGCCCCCATTCCCCTGGAATGGAAGGCCTCAGCCATTACTGGAACG GCGGCCGGAGGTGCCGCTCCCGCCACGCCTCCCCCGGCAGGCACCATTCCGGTAGCTGAAATGACGGATATTTACGGGCT CATGCCCGCCACCGTCATGAACGCCCTTACCGCTCCGGCTCACTGGGGGTGGTATTTCCTGGCCTACATCCCCGCCGTCA TCCTGCTGGGAATGGCTCTGATCCGCTACATCCGGAAAATCCGGAAGGAAAGCTTCACGGCCAGGGAACGCATGAGAGCC TTCCGCAGGCTCGCTTCCACTCCGCGCCAGGCAAGCTCCACGGAATTCCTGCGTGCCGCCGGCAACTTTATTGAATCCTA TATTCCGCCTTCCAAGCAGAATGAAAAAATGAAAGATATCCTTCAACTCCGGGACGACAGGGCATTCAAGCCTTCGGAAT CTTCGGAAGAACTGCCGCACGCGGAACGCCAGCACATGCTCCAGGCTATTAAAAAAGCCATCGCCAAGCTTCCCGTTCTC ATGATGGCCGCCGTACTGGCCATGTCCCTGGCAGGAGCAACCGGAAACGCGTCGGAAACGGACAACCTGGGTGTAAAAGC CTATGAACAGGGAGAGTACGCCAAAGCCATTGACTATTTCAGCAAGGAAAGCGGCAATATGAACCTTTCCAAGGCAGAAC GCGCCTACGCCTGTTTCGGCATCGGCAATTCCTATTACCGCATGAACAAACCCGGTCTGGCCGCTCTCAATTACCGCCGT GCTCTGGAACTCTCCCCGTACTTCACGGAAGCTGAATACAACCTGCTATTCATCGAACGCAAGGAGGGCGCCATCCTGCC CGCCAACACCACGGAAAACCAGTGGCTCACTTACATCCGCCATGATACGCTCGGCCCCATCTCCATCCTGTCCGGAGCCG TCATGCTCACCTTCCTGGCCCTGCTGACCGTTACCCGCAGACACGGGGCCCTGCTGACCATCCTGGCCACCCTTAGCGGA CTGGTCACAGTAGCGGCTGTCATGAACTACATCATGTACCCGGAAACCCCGGAATCCATTCCGGCAGATCGGTTACTGGT CGTTACCCAAAAAACGCCCGGCAGACATGCGGCGGACATGAACAGCCCTGCGCTCATCACCCTTCCGGAATCCACCCCGC TCATCCTGCGCGCGGAACGCGGCTCCTGGTACTACGCCAGCACCTTCCAGAACACGCCCGTCTGGATACCCAGGACGGAC GCTCAGCCGCTGTAG
Upstream 100 bases:
>100_bases GTTCCCCAGCGTTCTCCGGAAATTCCTCCGGATAAGGATTACTAACCCGTTCCGCCCGCATCCGCGAAGCCACCCCTTTA AACATATCCCGCAAAACAAG
Downstream 100 bases:
>100_bases CGCTTTATTATCCCGCCTCCTCCTCTGGAGCCGCCTCTCCGGAATGCCGTATTCCCGGAAGGGCGGCTTTCTTTCAGCCG CATTCAATCTTCTTCCCTAC
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: Aerotolerance-Related Exported Protein; TPR Repeat-Containing Protein; BatD/BatE Protein; Aerotolerance-Related Protein BatD
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MKKLLAILSLFFCMTVTLMAQQVVTTWLSDAVVPGEQTRLFIILTDGSIARQDPLPRVKGASLRWVSQGNYIRWPGSPNQ SAFLMAIEVTPDEVGTVEIPSLTLQANNGRTYTTLPQTLTVYPYSAIKWNTLNLNGTAVPYGMLWHVDNQKPYVHQPDRC ELKIYAPEYILEYTAPAITTSNLATWRFEPTLVELLRGQPRGSVLYKGVNWNVMTFQSTLFPLRAGEVTASGTVTARAAL PEADPLIANFIRSEVLVEMAIPEVKITARELPPGAPSSFTNAVGNFRISSTTDARDLSANEPITVKIRVTGTGNIHSIAC PALTDASNWKLYPPNKLDPGQNTRSIQGTVEFQQMMRPVAQTDAIPPFELTFFDPSTQQYKTVTTAPIPLEWKASAITGT AAGGAAPATPPPAGTIPVAEMTDIYGLMPATVMNALTAPAHWGWYFLAYIPAVILLGMALIRYIRKIRKESFTARERMRA FRRLASTPRQASSTEFLRAAGNFIESYIPPSKQNEKMKDILQLRDDRAFKPSESSEELPHAERQHMLQAIKKAIAKLPVL MMAAVLAMSLAGATGNASETDNLGVKAYEQGEYAKAIDYFSKESGNMNLSKAERAYACFGIGNSYYRMNKPGLAALNYRR ALELSPYFTEAEYNLLFIERKEGAILPANTTENQWLTYIRHDTLGPISILSGAVMLTFLALLTVTRRHGALLTILATLSG LVTVAAVMNYIMYPETPESIPADRLLVVTQKTPGRHAADMNSPALITLPESTPLILRAERGSWYYASTFQNTPVWIPRTD AQPL
Sequences:
>Translated_804_residues MKKLLAILSLFFCMTVTLMAQQVVTTWLSDAVVPGEQTRLFIILTDGSIARQDPLPRVKGASLRWVSQGNYIRWPGSPNQ SAFLMAIEVTPDEVGTVEIPSLTLQANNGRTYTTLPQTLTVYPYSAIKWNTLNLNGTAVPYGMLWHVDNQKPYVHQPDRC ELKIYAPEYILEYTAPAITTSNLATWRFEPTLVELLRGQPRGSVLYKGVNWNVMTFQSTLFPLRAGEVTASGTVTARAAL PEADPLIANFIRSEVLVEMAIPEVKITARELPPGAPSSFTNAVGNFRISSTTDARDLSANEPITVKIRVTGTGNIHSIAC PALTDASNWKLYPPNKLDPGQNTRSIQGTVEFQQMMRPVAQTDAIPPFELTFFDPSTQQYKTVTTAPIPLEWKASAITGT AAGGAAPATPPPAGTIPVAEMTDIYGLMPATVMNALTAPAHWGWYFLAYIPAVILLGMALIRYIRKIRKESFTARERMRA FRRLASTPRQASSTEFLRAAGNFIESYIPPSKQNEKMKDILQLRDDRAFKPSESSEELPHAERQHMLQAIKKAIAKLPVL MMAAVLAMSLAGATGNASETDNLGVKAYEQGEYAKAIDYFSKESGNMNLSKAERAYACFGIGNSYYRMNKPGLAALNYRR ALELSPYFTEAEYNLLFIERKEGAILPANTTENQWLTYIRHDTLGPISILSGAVMLTFLALLTVTRRHGALLTILATLSG LVTVAAVMNYIMYPETPESIPADRLLVVTQKTPGRHAADMNSPALITLPESTPLILRAERGSWYYASTFQNTPVWIPRTD AQPL >Mature_804_residues MKKLLAILSLFFCMTVTLMAQQVVTTWLSDAVVPGEQTRLFIILTDGSIARQDPLPRVKGASLRWVSQGNYIRWPGSPNQ SAFLMAIEVTPDEVGTVEIPSLTLQANNGRTYTTLPQTLTVYPYSAIKWNTLNLNGTAVPYGMLWHVDNQKPYVHQPDRC ELKIYAPEYILEYTAPAITTSNLATWRFEPTLVELLRGQPRGSVLYKGVNWNVMTFQSTLFPLRAGEVTASGTVTARAAL PEADPLIANFIRSEVLVEMAIPEVKITARELPPGAPSSFTNAVGNFRISSTTDARDLSANEPITVKIRVTGTGNIHSIAC PALTDASNWKLYPPNKLDPGQNTRSIQGTVEFQQMMRPVAQTDAIPPFELTFFDPSTQQYKTVTTAPIPLEWKASAITGT AAGGAAPATPPPAGTIPVAEMTDIYGLMPATVMNALTAPAHWGWYFLAYIPAVILLGMALIRYIRKIRKESFTARERMRA FRRLASTPRQASSTEFLRAAGNFIESYIPPSKQNEKMKDILQLRDDRAFKPSESSEELPHAERQHMLQAIKKAIAKLPVL MMAAVLAMSLAGATGNASETDNLGVKAYEQGEYAKAIDYFSKESGNMNLSKAERAYACFGIGNSYYRMNKPGLAALNYRR ALELSPYFTEAEYNLLFIERKEGAILPANTTENQWLTYIRHDTLGPISILSGAVMLTFLALLTVTRRHGALLTILATLSG LVTVAAVMNYIMYPETPESIPADRLLVVTQKTPGRHAADMNSPALITLPESTPLILRAERGSWYYASTFQNTPVWIPRTD AQPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88697; Mature: 88697
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLAILSLFFCMTVTLMAQQVVTTWLSDAVVPGEQTRLFIILTDGSIARQDPLPRVKG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCC ASLRWVSQGNYIRWPGSPNQSAFLMAIEVTPDEVGTVEIPSLTLQANNGRTYTTLPQTLT CEEEEEECCCEEECCCCCCCCEEEEEEEECCCCCCEEECCEEEEEECCCEEEEECCCEEE VYPYSAIKWNTLNLNGTAVPYGMLWHVDNQKPYVHQPDRCELKIYAPEYILEYTAPAITT EECCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEE SNLATWRFEPTLVELLRGQPRGSVLYKGVNWNVMTFQSTLFPLRAGEVTASGTVTARAAL CCCEEEEECHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCEEECCCEEECCCEEEEECC PEADPLIANFIRSEVLVEMAIPEVKITARELPPGAPSSFTNAVGNFRISSTTDARDLSAN CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCEEEECCCCCCCCCCC EPITVKIRVTGTGNIHSIACPALTDASNWKLYPPNKLDPGQNTRSIQGTVEFQQMMRPVA CCEEEEEEEEECCCEEEEECCCCCCCCCCEECCCCCCCCCCCCCEEEHHHHHHHHHHHHH QTDAIPPFELTFFDPSTQQYKTVTTAPIPLEWKASAITGTAAGGAAPATPPPAGTIPVAE HHCCCCCEEEEEECCCCCCEEEEECCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCHHH MTDIYGLMPATVMNALTAPAHWGWYFLAYIPAVILLGMALIRYIRKIRKESFTARERMRA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FRRLASTPRQASSTEFLRAAGNFIESYIPPSKQNEKMKDILQLRDDRAFKPSESSEELPH HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC AERQHMLQAIKKAIAKLPVLMMAAVLAMSLAGATGNASETDNLGVKAYEQGEYAKAIDYF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHH SKESGNMNLSKAERAYACFGIGNSYYRMNKPGLAALNYRRALELSPYFTEAEYNLLFIER HCCCCCCCHHHHCCEEEEEECCCCEEEECCCCCEEECHHHEEECCCCEECCCEEEEEEEC KEGAILPANTTENQWLTYIRHDTLGPISILSGAVMLTFLALLTVTRRHGALLTILATLSG CCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LVTVAAVMNYIMYPETPESIPADRLLVVTQKTPGRHAADMNSPALITLPESTPLILRAER HHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEECC GSWYYASTFQNTPVWIPRTDAQPL CCEEEEEECCCCCEEEECCCCCCC >Mature Secondary Structure MKKLLAILSLFFCMTVTLMAQQVVTTWLSDAVVPGEQTRLFIILTDGSIARQDPLPRVKG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCC ASLRWVSQGNYIRWPGSPNQSAFLMAIEVTPDEVGTVEIPSLTLQANNGRTYTTLPQTLT CEEEEEECCCEEECCCCCCCCEEEEEEEECCCCCCEEECCEEEEEECCCEEEEECCCEEE VYPYSAIKWNTLNLNGTAVPYGMLWHVDNQKPYVHQPDRCELKIYAPEYILEYTAPAITT EECCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEE SNLATWRFEPTLVELLRGQPRGSVLYKGVNWNVMTFQSTLFPLRAGEVTASGTVTARAAL CCCEEEEECHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCEEECCCEEECCCEEEEECC PEADPLIANFIRSEVLVEMAIPEVKITARELPPGAPSSFTNAVGNFRISSTTDARDLSAN CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCEEEECCCCCCCCCCC EPITVKIRVTGTGNIHSIACPALTDASNWKLYPPNKLDPGQNTRSIQGTVEFQQMMRPVA CCEEEEEEEEECCCEEEEECCCCCCCCCCEECCCCCCCCCCCCCEEEHHHHHHHHHHHHH QTDAIPPFELTFFDPSTQQYKTVTTAPIPLEWKASAITGTAAGGAAPATPPPAGTIPVAE HHCCCCCEEEEEECCCCCCEEEEECCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCHHH MTDIYGLMPATVMNALTAPAHWGWYFLAYIPAVILLGMALIRYIRKIRKESFTARERMRA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FRRLASTPRQASSTEFLRAAGNFIESYIPPSKQNEKMKDILQLRDDRAFKPSESSEELPH HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC AERQHMLQAIKKAIAKLPVLMMAAVLAMSLAGATGNASETDNLGVKAYEQGEYAKAIDYF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHH SKESGNMNLSKAERAYACFGIGNSYYRMNKPGLAALNYRRALELSPYFTEAEYNLLFIER HCCCCCCCHHHHCCEEEEEECCCCEEEECCCCCEEECHHHEEECCCCEECCCEEEEEEEC KEGAILPANTTENQWLTYIRHDTLGPISILSGAVMLTFLALLTVTRRHGALLTILATLSG CCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LVTVAAVMNYIMYPETPESIPADRLLVVTQKTPGRHAADMNSPALITLPESTPLILRAER HHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEECC GSWYYASTFQNTPVWIPRTDAQPL CCEEEEEECCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA