Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is glyQS [H]

Identifier: 187736261

GI number: 187736261

Start: 2158822

End: 2160399

Strand: Direct

Name: glyQS [H]

Synonym: Amuc_1774

Alternate gene names: 187736261

Gene position: 2158822-2160399 (Clockwise)

Preceding gene: 187736260

Following gene: 187736262

Centisome position: 81.03

GC content: 53.74

Gene sequence:

>1578_bases
ATGGCAGACAGAACCAACACAGACCCCGCCCGAATGGAAAAAATCGTGAGCCTCTGTAAAAGGAGGGGATTCATCTTCCA
GTCAGCTGAAATTTACGGCGGTCTGAACGGTTGCTGGGACTATGGTCCCATGGGGGTGGAGCTCAAGCGCAATCTGAAAG
AATACTGGTGGCGTAAAAATGTGCAGGAACGCGAGGATGTGGTCGGCATGGACGGTTCCATCCTGACGCATAACTCCGTA
CTGGTGGCTTCCGGCCATGTGGGCGGATTCTCCGACCCGATGTGCGATTGCCTGTTGACCAAGGAGCGTCTGCGTGCGGA
CCAGGTCCCGGCCCAGAGCGGCATGGGGTTTTTCTATACCGGAGCCGCCAAAAAAGACGGTTCCTGGAATATTGAAAAGA
AGTACTCCGTTCTGGTGGAATCTGAAAAACAGGCGGACAAGGCCCGTAAGACCGCGGCTCAATATTATGCCCAGCTGGCC
GGCAAGGATGCCTCTTACAAGGATATGGAGCTGAAAGGCGAGTGCATGGAAACCGTAACGGATTCCACCATGTACAATCC
TGCTAACGGTTCTCTGCTGACGGAAGCCCGTGAGTTCAACCTCATGTTCAAGACGACCATTGGAGCTACCTCTGATGAAA
ACGATCCCAACGCTACGGGCTGGCTGCGCCCGGAAACGGCCCAGTCCATTTTCTGCCAGTATAAGAACATTCTGGACAGT
TCCCGCGTCAAACTGCCTTTCGGAATCGCCCAGATCGGAAAATCTTTCCGCAATGAGATTAATCCGCGGAACTTCACTTT
CCGTTCCCGCGAATTCGAACAAATGGAAATCGAATATTTCTGCCGGCCGGAAGACGGGCTGCGCCTGGTGGATGAATGGC
TGGAACACCGTCTTTGCTTCTATGACGAAGTGGGGGTTCCGCGCGAACACATTCATATTTTGGACGTGCCGGACGGCGAA
CGCGCTTTCTACTCCAAGAAAACCTATGACCTGGAGTATGAATTCCCCTTCGGCATCCAGGAACTGGAGGGCATCGCCTA
CCGGACGGATTATGACCTGAGCTGCCATCAGAAAGGTTCCGGCCGTCCTCTGGAATATTTTGACGAAGAGACGCGGGAGA
AATTCATTCCCCATGTGGTGGAGCCTTCTGCCGGTTGTGACCGCACCATTCTGGCCATTATCTGCGAAGCTTACGATGAA
GAGGAACTGGTGGACGACAAAGGTAAAAAAGACGTCCGCACGGTGCTGCGCTTCGTGCCCCGCATGGCTCCGATCAAGGC
GGCCATCTTCCCTCTGCTTAAGAAAAACGGGGAACAGGTGCGTATTGCCCGGGAAATTGAAAAGACGCTTCAGCCGTGGA
TGTCCGTCTTTTATGATGAAACGGGAGCCGTCGGCCGCCGTTACCGTCGTCAGGATGAAGTGGGTACTCCTTTCTGCATA
ACCGTGGACTTTGAAACTCTCGGGGAAAATGATGCTTCGCTCAAGGGGACGGTGACCATTCGCCACCGCGACTCCATGAA
ACAGGAACGTGTTGCAATTGAAGACCTGCTGCATTGGCTTATTGCCCGCATACGTTGA

Upstream 100 bases:

>100_bases
TTCCTTGGAATTCTTGAGAAGACACGCTTTTTGCTTTTACTGAATGCTGATTGCGGGCATCAATACAACCCGCATAGCCA
ACCCAATTATATAACTTATC

Downstream 100 bases:

>100_bases
TGTTTTTTCAGCGGCTTTGATGCCGAAATTCCTTCAGAGCCGTTCCGTTGACAGCGGAACGGCTTTTTATTTTCAAAACA
GCAGTGAAAAAAGGGGGCTG

Product: glycyl-tRNA synthetase

Products: NA

Alternate protein names: Glycine--tRNA ligase; GlyRS [H]

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKNVQEREDVVGMDGSILTHNSV
LVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYTGAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLA
GKDASYKDMELKGECMETVTDSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDS
SRVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCFYDEVGVPREHIHILDVPDGE
RAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGSGRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDE
EELVDDKGKKDVRTVLRFVPRMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCI
TVDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR

Sequences:

>Translated_525_residues
MADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKNVQEREDVVGMDGSILTHNSV
LVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYTGAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLA
GKDASYKDMELKGECMETVTDSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDS
SRVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCFYDEVGVPREHIHILDVPDGE
RAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGSGRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDE
EELVDDKGKKDVRTVLRFVPRMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCI
TVDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR
>Mature_524_residues
ADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKNVQEREDVVGMDGSILTHNSVL
VASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYTGAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLAG
KDASYKDMELKGECMETVTDSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDSS
RVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCFYDEVGVPREHIHILDVPDGER
AFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGSGRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDEE
ELVDDKGKKDVRTVLRFVPRMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCIT
VDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR

Specific function: Catalyzes the attachment of glycine to tRNA(Gly) [H]

COG id: COG0423

COG function: function code J; Glycyl-tRNA synthetase (class II)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Homo sapiens, GI116805340, Length=628, Percent_Identity=29.140127388535, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI70887790, Length=320, Percent_Identity=26.5625, Blast_Score=90, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17554996, Length=393, Percent_Identity=33.587786259542, Blast_Score=163, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI32564541, Length=393, Percent_Identity=33.587786259542, Blast_Score=163, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6319597, Length=408, Percent_Identity=30.8823529411765, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6325338, Length=396, Percent_Identity=30.050505050505, Blast_Score=144, Evalue=4e-35,
Organism=Drosophila melanogaster, GI21357965, Length=396, Percent_Identity=32.8282828282828, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24664462, Length=396, Percent_Identity=32.8282828282828, Blast_Score=163, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002314
- InterPro:   IPR006195
- InterPro:   IPR004154
- InterPro:   IPR022961
- InterPro:   IPR002315 [H]

Pfam domain/function: PF03129 HGTP_anticodon; PF00587 tRNA-synt_2b [H]

EC number: =6.1.1.14 [H]

Molecular weight: Translated: 60335; Mature: 60204

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50862 AA_TRNA_LIGASE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKN
CCCCCCCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
VQEREDVVGMDGSILTHNSVLVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYT
CHHHHHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCEEEE
GAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLAGKDASYKDMELKGECMETVT
CCCCCCCCCCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
DSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDS
HCCEECCCCCCHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
SRVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCF
CCEECCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
YDEVGVPREHIHILDVPDGERAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGS
HHCCCCCHHHEEEEECCCCCHHHHCCCEEEEEEECCCCHHHHCCEEEECCCCCCCCCCCC
GRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDEEELVDDKGKKDVRTVLRFVP
CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHC
RMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCI
CCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEE
TVDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR
EEEHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKN
CCCCCCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
VQEREDVVGMDGSILTHNSVLVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYT
CHHHHHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCEEEE
GAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLAGKDASYKDMELKGECMETVT
CCCCCCCCCCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
DSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDS
HCCEECCCCCCHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
SRVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCF
CCEECCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
YDEVGVPREHIHILDVPDGERAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGS
HHCCCCCHHHEEEEECCCCCHHHHCCCEEEEEEECCCCHHHHCCEEEECCCCCCCCCCCC
GRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDEEELVDDKGKKDVRTVLRFVP
CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHC
RMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCI
CCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEE
TVDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR
EEEHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12835416 [H]