Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is glyQS [H]
Identifier: 187736261
GI number: 187736261
Start: 2158822
End: 2160399
Strand: Direct
Name: glyQS [H]
Synonym: Amuc_1774
Alternate gene names: 187736261
Gene position: 2158822-2160399 (Clockwise)
Preceding gene: 187736260
Following gene: 187736262
Centisome position: 81.03
GC content: 53.74
Gene sequence:
>1578_bases ATGGCAGACAGAACCAACACAGACCCCGCCCGAATGGAAAAAATCGTGAGCCTCTGTAAAAGGAGGGGATTCATCTTCCA GTCAGCTGAAATTTACGGCGGTCTGAACGGTTGCTGGGACTATGGTCCCATGGGGGTGGAGCTCAAGCGCAATCTGAAAG AATACTGGTGGCGTAAAAATGTGCAGGAACGCGAGGATGTGGTCGGCATGGACGGTTCCATCCTGACGCATAACTCCGTA CTGGTGGCTTCCGGCCATGTGGGCGGATTCTCCGACCCGATGTGCGATTGCCTGTTGACCAAGGAGCGTCTGCGTGCGGA CCAGGTCCCGGCCCAGAGCGGCATGGGGTTTTTCTATACCGGAGCCGCCAAAAAAGACGGTTCCTGGAATATTGAAAAGA AGTACTCCGTTCTGGTGGAATCTGAAAAACAGGCGGACAAGGCCCGTAAGACCGCGGCTCAATATTATGCCCAGCTGGCC GGCAAGGATGCCTCTTACAAGGATATGGAGCTGAAAGGCGAGTGCATGGAAACCGTAACGGATTCCACCATGTACAATCC TGCTAACGGTTCTCTGCTGACGGAAGCCCGTGAGTTCAACCTCATGTTCAAGACGACCATTGGAGCTACCTCTGATGAAA ACGATCCCAACGCTACGGGCTGGCTGCGCCCGGAAACGGCCCAGTCCATTTTCTGCCAGTATAAGAACATTCTGGACAGT TCCCGCGTCAAACTGCCTTTCGGAATCGCCCAGATCGGAAAATCTTTCCGCAATGAGATTAATCCGCGGAACTTCACTTT CCGTTCCCGCGAATTCGAACAAATGGAAATCGAATATTTCTGCCGGCCGGAAGACGGGCTGCGCCTGGTGGATGAATGGC TGGAACACCGTCTTTGCTTCTATGACGAAGTGGGGGTTCCGCGCGAACACATTCATATTTTGGACGTGCCGGACGGCGAA CGCGCTTTCTACTCCAAGAAAACCTATGACCTGGAGTATGAATTCCCCTTCGGCATCCAGGAACTGGAGGGCATCGCCTA CCGGACGGATTATGACCTGAGCTGCCATCAGAAAGGTTCCGGCCGTCCTCTGGAATATTTTGACGAAGAGACGCGGGAGA AATTCATTCCCCATGTGGTGGAGCCTTCTGCCGGTTGTGACCGCACCATTCTGGCCATTATCTGCGAAGCTTACGATGAA GAGGAACTGGTGGACGACAAAGGTAAAAAAGACGTCCGCACGGTGCTGCGCTTCGTGCCCCGCATGGCTCCGATCAAGGC GGCCATCTTCCCTCTGCTTAAGAAAAACGGGGAACAGGTGCGTATTGCCCGGGAAATTGAAAAGACGCTTCAGCCGTGGA TGTCCGTCTTTTATGATGAAACGGGAGCCGTCGGCCGCCGTTACCGTCGTCAGGATGAAGTGGGTACTCCTTTCTGCATA ACCGTGGACTTTGAAACTCTCGGGGAAAATGATGCTTCGCTCAAGGGGACGGTGACCATTCGCCACCGCGACTCCATGAA ACAGGAACGTGTTGCAATTGAAGACCTGCTGCATTGGCTTATTGCCCGCATACGTTGA
Upstream 100 bases:
>100_bases TTCCTTGGAATTCTTGAGAAGACACGCTTTTTGCTTTTACTGAATGCTGATTGCGGGCATCAATACAACCCGCATAGCCA ACCCAATTATATAACTTATC
Downstream 100 bases:
>100_bases TGTTTTTTCAGCGGCTTTGATGCCGAAATTCCTTCAGAGCCGTTCCGTTGACAGCGGAACGGCTTTTTATTTTCAAAACA GCAGTGAAAAAAGGGGGCTG
Product: glycyl-tRNA synthetase
Products: NA
Alternate protein names: Glycine--tRNA ligase; GlyRS [H]
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKNVQEREDVVGMDGSILTHNSV LVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYTGAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLA GKDASYKDMELKGECMETVTDSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDS SRVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCFYDEVGVPREHIHILDVPDGE RAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGSGRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDE EELVDDKGKKDVRTVLRFVPRMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCI TVDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR
Sequences:
>Translated_525_residues MADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKNVQEREDVVGMDGSILTHNSV LVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYTGAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLA GKDASYKDMELKGECMETVTDSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDS SRVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCFYDEVGVPREHIHILDVPDGE RAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGSGRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDE EELVDDKGKKDVRTVLRFVPRMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCI TVDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR >Mature_524_residues ADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKNVQEREDVVGMDGSILTHNSVL VASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYTGAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLAG KDASYKDMELKGECMETVTDSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDSS RVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCFYDEVGVPREHIHILDVPDGER AFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGSGRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDEE ELVDDKGKKDVRTVLRFVPRMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCIT VDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR
Specific function: Catalyzes the attachment of glycine to tRNA(Gly) [H]
COG id: COG0423
COG function: function code J; Glycyl-tRNA synthetase (class II)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI116805340, Length=628, Percent_Identity=29.140127388535, Blast_Score=200, Evalue=3e-51, Organism=Homo sapiens, GI70887790, Length=320, Percent_Identity=26.5625, Blast_Score=90, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17554996, Length=393, Percent_Identity=33.587786259542, Blast_Score=163, Evalue=2e-40, Organism=Caenorhabditis elegans, GI32564541, Length=393, Percent_Identity=33.587786259542, Blast_Score=163, Evalue=2e-40, Organism=Saccharomyces cerevisiae, GI6319597, Length=408, Percent_Identity=30.8823529411765, Blast_Score=155, Evalue=2e-38, Organism=Saccharomyces cerevisiae, GI6325338, Length=396, Percent_Identity=30.050505050505, Blast_Score=144, Evalue=4e-35, Organism=Drosophila melanogaster, GI21357965, Length=396, Percent_Identity=32.8282828282828, Blast_Score=163, Evalue=3e-40, Organism=Drosophila melanogaster, GI24664462, Length=396, Percent_Identity=32.8282828282828, Blast_Score=163, Evalue=3e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR022961 - InterPro: IPR002315 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF00587 tRNA-synt_2b [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 60335; Mature: 60204
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKN CCCCCCCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC VQEREDVVGMDGSILTHNSVLVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYT CHHHHHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCEEEE GAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLAGKDASYKDMELKGECMETVT CCCCCCCCCCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH DSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDS HCCEECCCCCCHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC SRVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCF CCEECCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH YDEVGVPREHIHILDVPDGERAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGS HHCCCCCHHHEEEEECCCCCHHHHCCCEEEEEEECCCCHHHHCCEEEECCCCCCCCCCCC GRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDEEELVDDKGKKDVRTVLRFVP CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHC RMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCI CCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEE TVDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR EEEHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ADRTNTDPARMEKIVSLCKRRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKN CCCCCCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC VQEREDVVGMDGSILTHNSVLVASGHVGGFSDPMCDCLLTKERLRADQVPAQSGMGFFYT CHHHHHHCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCEEEE GAAKKDGSWNIEKKYSVLVESEKQADKARKTAAQYYAQLAGKDASYKDMELKGECMETVT CCCCCCCCCCCCHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH DSTMYNPANGSLLTEAREFNLMFKTTIGATSDENDPNATGWLRPETAQSIFCQYKNILDS HCCEECCCCCCHHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC SRVKLPFGIAQIGKSFRNEINPRNFTFRSREFEQMEIEYFCRPEDGLRLVDEWLEHRLCF CCEECCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH YDEVGVPREHIHILDVPDGERAFYSKKTYDLEYEFPFGIQELEGIAYRTDYDLSCHQKGS HHCCCCCHHHEEEEECCCCCHHHHCCCEEEEEEECCCCHHHHCCEEEECCCCCCCCCCCC GRPLEYFDEETREKFIPHVVEPSAGCDRTILAIICEAYDEEELVDDKGKKDVRTVLRFVP CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHC RMAPIKAAIFPLLKKNGEQVRIAREIEKTLQPWMSVFYDETGAVGRRYRRQDEVGTPFCI CCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEE TVDFETLGENDASLKGTVTIRHRDSMKQERVAIEDLLHWLIARIR EEEHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12835416 [H]