Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yqgE [C]
Identifier: 187736251
GI number: 187736251
Start: 2147120
End: 2147683
Strand: Reverse
Name: yqgE [C]
Synonym: Amuc_1764
Alternate gene names: 187736251
Gene position: 2147683-2147120 (Counterclockwise)
Preceding gene: 187736252
Following gene: 187736250
Centisome position: 80.62
GC content: 58.87
Gene sequence:
>564_bases ATGGCCATGATGGAACACGAAGATATCAGCAATGAAAACCTGGCGGGGCACCTTCTGGTTGCCGCCCCCTACCTGGATGG CGCCGGATTCCATCATTCCGTCATCTTCCTGAGCCGGGCGGAGAAGGAATTTGTCATCGGCCATATTTTGAATCATCCGT CCGGCATGAATGTGGGGGACGTAGCCCGCCATACGGAAATACCGGAATCCCTTTACGCCGTGCCCATCTTCAAGGGAGGA CCCGTAGAACGCAACCAGCTCATCTTCGCCGCTTTCATCCGCACGGAGGATAAATTGCGCGTCCAGTTTCATCTGCAGGA GGAACAGGCCCTGGAATACCTGGAAGACCCCCGCGCCATCCTGCGCGCCTACGTAGGCCATAGCGGATGGACGCCGCCCC AGCTGCGCCGGGAACTGAATGACCGTGCCTGGTATGTTTCCCCCATGGTGCCGGACATCTGCCTGGAAACGGATTCTTCC AAGGTCTGGGCCATGGCCATGCGGCGGCTCTCTCCCCTGCACCATATCATGAGCCACGCGTCCGCACAGCCATCCCTGAA CTGA
Upstream 100 bases:
>100_bases CTTCCCTCCTGTTTTTCCGGTGTTCCGTTTTCACCGCCTCCTGACATGGCCGTTTGAACGCATGGTTGCCTGCATCCGTC ACATTTGGTAACGTAGATTT
Downstream 100 bases:
>100_bases ACCATCCATCATGAGCATCCAACAAAATCTGGAACATATTCTCTCCCGCATACGCGCAGCGGAACTCCGCGCCGGACGTC CGGCGGGTTCCGTCCGCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MAMMEHEDISNENLAGHLLVAAPYLDGAGFHHSVIFLSRAEKEFVIGHILNHPSGMNVGDVARHTEIPESLYAVPIFKGG PVERNQLIFAAFIRTEDKLRVQFHLQEEQALEYLEDPRAILRAYVGHSGWTPPQLRRELNDRAWYVSPMVPDICLETDSS KVWAMAMRRLSPLHHIMSHASAQPSLN
Sequences:
>Translated_187_residues MAMMEHEDISNENLAGHLLVAAPYLDGAGFHHSVIFLSRAEKEFVIGHILNHPSGMNVGDVARHTEIPESLYAVPIFKGG PVERNQLIFAAFIRTEDKLRVQFHLQEEQALEYLEDPRAILRAYVGHSGWTPPQLRRELNDRAWYVSPMVPDICLETDSS KVWAMAMRRLSPLHHIMSHASAQPSLN >Mature_186_residues AMMEHEDISNENLAGHLLVAAPYLDGAGFHHSVIFLSRAEKEFVIGHILNHPSGMNVGDVARHTEIPESLYAVPIFKGGP VERNQLIFAAFIRTEDKLRVQFHLQEEQALEYLEDPRAILRAYVGHSGWTPPQLRRELNDRAWYVSPMVPDICLETDSSK VWAMAMRRLSPLHHIMSHASAQPSLN
Specific function: Unknown
COG id: COG1678
COG function: function code K; Putative transcriptional regulator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0301 (AlgH) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003774 [H]
Pfam domain/function: PF02622 DUF179 [H]
EC number: NA
Molecular weight: Translated: 21169; Mature: 21038
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMMEHEDISNENLAGHLLVAAPYLDGAGFHHSVIFLSRAEKEFVIGHILNHPSGMNVGD CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHH VARHTEIPESLYAVPIFKGGPVERNQLIFAAFIRTEDKLRVQFHLQEEQALEYLEDPRAI HHHHHCCCCHHEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECHHHHHHHHHCHHHH LRAYVGHSGWTPPQLRRELNDRAWYVSPMVPDICLETDSSKVWAMAMRRLSPLHHIMSHA HHHHHCCCCCCCHHHHHHHCCCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHC SAQPSLN CCCCCCC >Mature Secondary Structure AMMEHEDISNENLAGHLLVAAPYLDGAGFHHSVIFLSRAEKEFVIGHILNHPSGMNVGD CCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHH VARHTEIPESLYAVPIFKGGPVERNQLIFAAFIRTEDKLRVQFHLQEEQALEYLEDPRAI HHHHHCCCCHHEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECHHHHHHHHHCHHHH LRAYVGHSGWTPPQLRRELNDRAWYVSPMVPDICLETDSSKVWAMAMRRLSPLHHIMSHA HHHHHCCCCCCCHHHHHHHCCCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHC SAQPSLN CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA