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The map label for this gene is yggS [C]

Identifier: 187736250

GI number: 187736250

Start: 2146414

End: 2147109

Strand: Reverse

Name: yggS [C]

Synonym: Amuc_1763

Alternate gene names: 187736250

Gene position: 2147109-2146414 (Counterclockwise)

Preceding gene: 187736251

Following gene: 187736249

Centisome position: 80.59

GC content: 59.48

Gene sequence:

>696_bases
ATGAGCATCCAACAAAATCTGGAACATATTCTCTCCCGCATACGCGCAGCGGAACTCCGCGCCGGACGTCCGGCGGGTTC
CGTCCGCCTCGTCGCCGTCAGCAAAACTTTTCCCGCAGAGGATGTGAAAGCGTGCCATGATGCGGGCCAGCGCATTTTCG
GTGAAAACAAGGTCCAGGAGGGACTGGGAAAAATCCCCTCCCTTCCTCCGGATACGGAATGGCATCTCATTGGCCCCCTC
CAGCGCAACAAGGTGCGCAAGGCCCTGGAATATTTCACGCTGATCCATGCCGTGGACTCCCTGCGCCTGGCCCGGTTCAT
GGATACCGTGGCTCAGGAAACGGGAAAACGGCCCCGCATTTTGCTGGAAGTGAACGTAGGCAATGAAGACAGTAAGTTCG
GATTCTTCCCGGAAACCCTGGAAAAGGAATGGCCGGAGCTGTCCTCCCTGAACCATCTTGAAATCGCCGGCCTTATGTGC
ATTCCCCCCCCGGTGGAAAATCCGGAGGAGGCGCGGCCCTATTTCCGCCGCCTCCGGGAGCTGAAGGAAGTCCTGTCCGG
CAGGGGAGGAGCCACGCTGACGGAACTGTCCATGGGCATGAGCCACGACTTTGAAACGGCAATAGAGGAAGGAGCCACGC
TCGTCCGCGTAGGGACGGCTATTTTCGGCGGCCGCTCGTACGCTCCCGCTTCGTGA

Upstream 100 bases:

>100_bases
TCTTCCAAGGTCTGGGCCATGGCCATGCGGCGGCTCTCTCCCCTGCACCATATCATGAGCCACGCGTCCGCACAGCCATC
CCTGAACTGAACCATCCATC

Downstream 100 bases:

>100_bases
TTTTAGTTGGACAGAAGGAAAAGCGGCGTGTAGGTTTGTTCCGGAAAACCGGAACAGCCCGGACGGAGACCTGATTTCAT
CACCCCATGCTGACAGGAGG

Product: alanine racemase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSIQQNLEHILSRIRAAELRAGRPAGSVRLVAVSKTFPAEDVKACHDAGQRIFGENKVQEGLGKIPSLPPDTEWHLIGPL
QRNKVRKALEYFTLIHAVDSLRLARFMDTVAQETGKRPRILLEVNVGNEDSKFGFFPETLEKEWPELSSLNHLEIAGLMC
IPPPVENPEEARPYFRRLRELKEVLSGRGGATLTELSMGMSHDFETAIEEGATLVRVGTAIFGGRSYAPAS

Sequences:

>Translated_231_residues
MSIQQNLEHILSRIRAAELRAGRPAGSVRLVAVSKTFPAEDVKACHDAGQRIFGENKVQEGLGKIPSLPPDTEWHLIGPL
QRNKVRKALEYFTLIHAVDSLRLARFMDTVAQETGKRPRILLEVNVGNEDSKFGFFPETLEKEWPELSSLNHLEIAGLMC
IPPPVENPEEARPYFRRLRELKEVLSGRGGATLTELSMGMSHDFETAIEEGATLVRVGTAIFGGRSYAPAS
>Mature_230_residues
SIQQNLEHILSRIRAAELRAGRPAGSVRLVAVSKTFPAEDVKACHDAGQRIFGENKVQEGLGKIPSLPPDTEWHLIGPLQ
RNKVRKALEYFTLIHAVDSLRLARFMDTVAQETGKRPRILLEVNVGNEDSKFGFFPETLEKEWPELSSLNHLEIAGLMCI
PPPVENPEEARPYFRRLRELKEVLSGRGGATLTELSMGMSHDFETAIEEGATLVRVGTAIFGGRSYAPAS

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=237, Percent_Identity=39.2405063291139, Blast_Score=126, Evalue=2e-29,
Organism=Escherichia coli, GI1789321, Length=237, Percent_Identity=38.3966244725738, Blast_Score=149, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17533025, Length=242, Percent_Identity=34.297520661157, Blast_Score=114, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6319435, Length=221, Percent_Identity=35.2941176470588, Blast_Score=106, Evalue=3e-24,
Organism=Drosophila melanogaster, GI45550861, Length=251, Percent_Identity=38.6454183266932, Blast_Score=122, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25627; Mature: 25495

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQQNLEHILSRIRAAELRAGRPAGSVRLVAVSKTFPAEDVKACHDAGQRIFGENKVQE
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCHHHHHH
GLGKIPSLPPDTEWHLIGPLQRNKVRKALEYFTLIHAVDSLRLARFMDTVAQETGKRPRI
HHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LLEVNVGNEDSKFGFFPETLEKEWPELSSLNHLEIAGLMCIPPPVENPEEARPYFRRLRE
EEEEECCCCCCCCCCCHHHHHHCCCHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
LKEVLSGRGGATLTELSMGMSHDFETAIEEGATLVRVGTAIFGGRSYAPAS
HHHHHCCCCCCHHHHHHHCCCCCHHHHHHCCCEEEEHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SIQQNLEHILSRIRAAELRAGRPAGSVRLVAVSKTFPAEDVKACHDAGQRIFGENKVQE
CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCHHHHHH
GLGKIPSLPPDTEWHLIGPLQRNKVRKALEYFTLIHAVDSLRLARFMDTVAQETGKRPRI
HHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LLEVNVGNEDSKFGFFPETLEKEWPELSSLNHLEIAGLMCIPPPVENPEEARPYFRRLRE
EEEEECCCCCCCCCCCHHHHHHCCCHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
LKEVLSGRGGATLTELSMGMSHDFETAIEEGATLVRVGTAIFGGRSYAPAS
HHHHHCCCCCCHHHHHHHCCCCCHHHHHHCCCEEEEHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]