Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736249
Identifier: 187736249
GI number: 187736249
Start: 2144660
End: 2146327
Strand: Reverse
Name: 187736249
Synonym: Amuc_1762
Alternate gene names: NA
Gene position: 2146327-2144660 (Counterclockwise)
Preceding gene: 187736250
Following gene: 187736245
Centisome position: 80.56
GC content: 58.99
Gene sequence:
>1668_bases ATGCTGACAGGAGGAAAAAACGTGATTCCGCATGCGGTGCGGGACGTAGCGGATGCCGCCGCGGCGTTTTCCGCCCGCAT CGGCCCCGACCGTCATTTCGATTCCCAGAAAAAGGTGGAGGAAGCCCTGGCCGAATGCTGCTCTCCGCAGAATGTCACCG TCATCGGCATGACAGGGTCCGGCAAATCCTCTACGCTGGACGCCCTGGCCGGGGAACAGTTCTGTTCCCGCGTGTCCAGT GAAGCCACACTGGTCCGCTGGCAGTACAGGCCTCATCCCGCCCCACACACCCATGAATGGGTTCTGGACCTTTTTTACCC GTCGGACGCCCTGCTCAACCTGGAGTTCTGGGATACCATCGGCCTGGAACAGGAGGATGCCCCCAGAAAGCTGAAGCACA TCGTTCCCAAATCGGATGCCATCCTTGTGGTTATTTCCGCCAGTGACGGCAACCATTCCGCCCTGTGGGACTATCTCCGG ACGCTGGAGGAACGTCTTCATTCCCGCATGGTTCTCGTCATCACCCATGCGGAGCTGCTCTCCTTTGAGAAGCTTCAATC CTTGAAAGAGGAGCTACGCTCCACCTCCCGGGAACACCTGGGCGTGCAGCTGCCTCTGTACCCTGTCACGACCGCCGGAG AGCATGCAGGGGAAGGAGTGGAAGCCCTGACGGCATGCGTTCAGGAAGTGCTGAAACGCAGCCCGCTGACGGACAAGCGC GTGGAACGCCTCCTGCTGGCTACGGACAGCCTTCTGGAAGAACAGGGGAAGGTGCTTGATGAACTGAGCCGCCTTTCCAA GATGGATTCCGGCTTCCTGACGTCTATTGACCGGGAAATCGACCGCATCCAGCTCCAGATGGAGGATGAAATGCCGGCAC GCCTCAAGGCGTACGCGCAATACGTGCAGGACTGCGTGCCGCGTCTGGGGAAAAAGTCGGCACGCCAGATGGGGCGTTTC CTATCCATCCGGCGCACGATGATCCTGCACAAACTTCCTCCCGTCATTGACGAATGGTTTTATGAGCTGGTCAAATCCGG CATTGAGGAACGGCACGCGTATTACAACAAGGAATTCCTGAACATCTGCCAGACGCACTGGAACCATGTGCGCCCGCGCG TGAAGGAACAATGGGACTGCGACATAGGGGATTTCCCGGCCGCAAAACTCCAGACGGATCTGGAAGTGTACAAGGAGAGG CTGGGACGTTCCATTTACATGCCCCTGAAGGACTTCGGCATCAAGCCGTGCCTCAGCAAGCTTTTTCTGGATCAGGAGGA TGTGATGAGGACGGAAATCAAGCTGATGCTCCTTCTGGTGATTCTGGGAGCCCTGCTGGGCTGTTTCGGAGAGCACGCAG CAGGGTTCGCCTGCGTAGGCGCGGCCCTGGCCGTCTGGGTGGGCGGCAACCTGGGGCTGGCCTGGATGCAGTTCCGCCTG TCCCGCCAGATCGTGGCCGCAGCGGCGGAAATGCACATTGCCGTGGAATGCGGGCTACGCACCCCCCTGTATGAAGCCAT GATCAGCGGACTTTCCGACTACCGAAAACTGTATGCGGACATCCGCGGTCAGGTAGCCGGAGGGGTAGAATACCTCCAGC CCCTGCTCAACGCCCGCTACGACCTGTTTTATAAACTGACCGTGCAGAAACACCGGTTCCGTATCTAG
Upstream 100 bases:
>100_bases CTCCCGCTTCGTGATTTTAGTTGGACAGAAGGAAAAGCGGCGTGTAGGTTTGTTCCGGAAAACCGGAACAGCCCGGACGG AGACCTGATTTCATCACCCC
Downstream 100 bases:
>100_bases CCTCTTTCCCTTTCTCCGGAAGGGTGTTACTGTTACTCCCCTCCCGGCGCAATCACCATGTCCACATGCCTGTCATGGGC TTCCATGGGCAGATCGTCCA
Product: Miro domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 555; Mature: 555
Protein sequence:
>555_residues MLTGGKNVIPHAVRDVADAAAAFSARIGPDRHFDSQKKVEEALAECCSPQNVTVIGMTGSGKSSTLDALAGEQFCSRVSS EATLVRWQYRPHPAPHTHEWVLDLFYPSDALLNLEFWDTIGLEQEDAPRKLKHIVPKSDAILVVISASDGNHSALWDYLR TLEERLHSRMVLVITHAELLSFEKLQSLKEELRSTSREHLGVQLPLYPVTTAGEHAGEGVEALTACVQEVLKRSPLTDKR VERLLLATDSLLEEQGKVLDELSRLSKMDSGFLTSIDREIDRIQLQMEDEMPARLKAYAQYVQDCVPRLGKKSARQMGRF LSIRRTMILHKLPPVIDEWFYELVKSGIEERHAYYNKEFLNICQTHWNHVRPRVKEQWDCDIGDFPAAKLQTDLEVYKER LGRSIYMPLKDFGIKPCLSKLFLDQEDVMRTEIKLMLLLVILGALLGCFGEHAAGFACVGAALAVWVGGNLGLAWMQFRL SRQIVAAAAEMHIAVECGLRTPLYEAMISGLSDYRKLYADIRGQVAGGVEYLQPLLNARYDLFYKLTVQKHRFRI
Sequences:
>Translated_555_residues MLTGGKNVIPHAVRDVADAAAAFSARIGPDRHFDSQKKVEEALAECCSPQNVTVIGMTGSGKSSTLDALAGEQFCSRVSS EATLVRWQYRPHPAPHTHEWVLDLFYPSDALLNLEFWDTIGLEQEDAPRKLKHIVPKSDAILVVISASDGNHSALWDYLR TLEERLHSRMVLVITHAELLSFEKLQSLKEELRSTSREHLGVQLPLYPVTTAGEHAGEGVEALTACVQEVLKRSPLTDKR VERLLLATDSLLEEQGKVLDELSRLSKMDSGFLTSIDREIDRIQLQMEDEMPARLKAYAQYVQDCVPRLGKKSARQMGRF LSIRRTMILHKLPPVIDEWFYELVKSGIEERHAYYNKEFLNICQTHWNHVRPRVKEQWDCDIGDFPAAKLQTDLEVYKER LGRSIYMPLKDFGIKPCLSKLFLDQEDVMRTEIKLMLLLVILGALLGCFGEHAAGFACVGAALAVWVGGNLGLAWMQFRL SRQIVAAAAEMHIAVECGLRTPLYEAMISGLSDYRKLYADIRGQVAGGVEYLQPLLNARYDLFYKLTVQKHRFRI >Mature_555_residues MLTGGKNVIPHAVRDVADAAAAFSARIGPDRHFDSQKKVEEALAECCSPQNVTVIGMTGSGKSSTLDALAGEQFCSRVSS EATLVRWQYRPHPAPHTHEWVLDLFYPSDALLNLEFWDTIGLEQEDAPRKLKHIVPKSDAILVVISASDGNHSALWDYLR TLEERLHSRMVLVITHAELLSFEKLQSLKEELRSTSREHLGVQLPLYPVTTAGEHAGEGVEALTACVQEVLKRSPLTDKR VERLLLATDSLLEEQGKVLDELSRLSKMDSGFLTSIDREIDRIQLQMEDEMPARLKAYAQYVQDCVPRLGKKSARQMGRF LSIRRTMILHKLPPVIDEWFYELVKSGIEERHAYYNKEFLNICQTHWNHVRPRVKEQWDCDIGDFPAAKLQTDLEVYKER LGRSIYMPLKDFGIKPCLSKLFLDQEDVMRTEIKLMLLLVILGALLGCFGEHAAGFACVGAALAVWVGGNLGLAWMQFRL SRQIVAAAAEMHIAVECGLRTPLYEAMISGLSDYRKLYADIRGQVAGGVEYLQPLLNARYDLFYKLTVQKHRFRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62730; Mature: 62730
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTGGKNVIPHAVRDVADAAAAFSARIGPDRHFDSQKKVEEALAECCSPQNVTVIGMTGS CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC GKSSTLDALAGEQFCSRVSSEATLVRWQYRPHPAPHTHEWVLDLFYPSDALLNLEFWDTI CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHEEEECCCCCEEEEEHHHHC GLEQEDAPRKLKHIVPKSDAILVVISASDGNHSALWDYLRTLEERLHSRMVLVITHAELL CCCCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHH SFEKLQSLKEELRSTSREHLGVQLPLYPVTTAGEHAGEGVEALTACVQEVLKRSPLTDKR HHHHHHHHHHHHHHHHHHHCCEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH VERLLLATDSLLEEQGKVLDELSRLSKMDSGFLTSIDREIDRIQLQMEDEMPARLKAYAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHH YVQDCVPRLGKKSARQMGRFLSIRRTMILHKLPPVIDEWFYELVKSGIEERHAYYNKEFL HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH NICQTHWNHVRPRVKEQWDCDIGDFPAAKLQTDLEVYKERLGRSIYMPLKDFGIKPCLSK HHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCHHHCCHHHHHHH LFLDQEDVMRTEIKLMLLLVILGALLGCFGEHAAGFACVGAALAVWVGGNLGLAWMQFRL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH SRQIVAAAAEMHIAVECGLRTPLYEAMISGLSDYRKLYADIRGQVAGGVEYLQPLLNARY HHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHH DLFYKLTVQKHRFRI HEEEEEEEHHHHCCC >Mature Secondary Structure MLTGGKNVIPHAVRDVADAAAAFSARIGPDRHFDSQKKVEEALAECCSPQNVTVIGMTGS CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC GKSSTLDALAGEQFCSRVSSEATLVRWQYRPHPAPHTHEWVLDLFYPSDALLNLEFWDTI CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHEEEECCCCCEEEEEHHHHC GLEQEDAPRKLKHIVPKSDAILVVISASDGNHSALWDYLRTLEERLHSRMVLVITHAELL CCCCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHH SFEKLQSLKEELRSTSREHLGVQLPLYPVTTAGEHAGEGVEALTACVQEVLKRSPLTDKR HHHHHHHHHHHHHHHHHHHCCEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH VERLLLATDSLLEEQGKVLDELSRLSKMDSGFLTSIDREIDRIQLQMEDEMPARLKAYAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHH YVQDCVPRLGKKSARQMGRFLSIRRTMILHKLPPVIDEWFYELVKSGIEERHAYYNKEFL HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH NICQTHWNHVRPRVKEQWDCDIGDFPAAKLQTDLEVYKERLGRSIYMPLKDFGIKPCLSK HHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCHHHCCHHHHHHH LFLDQEDVMRTEIKLMLLLVILGALLGCFGEHAAGFACVGAALAVWVGGNLGLAWMQFRL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH SRQIVAAAAEMHIAVECGLRTPLYEAMISGLSDYRKLYADIRGQVAGGVEYLQPLLNARY HHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHH DLFYKLTVQKHRFRI HEEEEEEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA