Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is ydeN [H]
Identifier: 187736242
GI number: 187736242
Start: 2136730
End: 2138418
Strand: Reverse
Name: ydeN [H]
Synonym: Amuc_1755
Alternate gene names: 187736242
Gene position: 2138418-2136730 (Counterclockwise)
Preceding gene: 187736243
Following gene: 187736241
Centisome position: 80.27
GC content: 57.67
Gene sequence:
>1689_bases ATGAACATTTCCCGTATTGCAGCCTTTCTCATCCCGTTCCTGCTGGGAAGCGCCTGCTCTGCTTCCGCAGCTTCCGTAAA AGCATCCCGCGCGGCAGAACCGAAACGCCCCAACATCATCCTCTTTCTGGTGGACGACATGGGCTGGCAGGATACATCCC TGCCCTTTTGGCGGGAAGAGGACGGCACTCCCAAACCTACTTTCCTGAACAAGCGCTACCGCACGCCCAACATGGAGGCT CTGGGCAAGCAGGGCATGGTCTTCACGAACGCCTACGCGCAGCCTATCTGTTCCCCCAGCCGATGCAGCCTCATGTCCGG CATGAACTCCGCCCGCCACCGCGTCACGAACTGGACGCTCCTGCGTGACCAAACCACGGACGCAGGCCATCAAGCGCTCA AGGCTCCCGCAGACTGGAGCGTCAACGGCATCCAGCCGGCAGGAACCAGGGCATCCGGAACCACCCATCTTCCCCTGACG GAAGAAAAAATCCAGTACAGGATGGAAAAACCCTTCACCCAGGTGCTTGGGCTGCCCGCCCTGCTCAAAAAACAGGGGTA TACCACCATCCACTGCGGAAAAGCCCATTTCGGCTCCAAAAATACGCCCGGAGCCAATCCCAGGCTCTTCGGCTTTGACT ACAATATCGCCGGCACGGAAATAGGCGGCCCGGCGGACTACCGGGGTTCCCGGAAATACGGCACGGGGAATTTCCATGTC CGCGGACTGGATGAAAATAATTACTATGAAAACGACACATTCCTGACGGAAGCCCTGACGCAGGAGGCACTGAAACGCCT GGACGCCATCCGGAAAAACCCCAGGGAGGCGGACAAGCCTTTCTACCTGTACATGTCCCACTACGCCATCCATGCCCCCT TCGACATGCGCGGTTATGACAAGAGGTTTGCGGAAGAGTACTCCAACCCCAATGACGGCCACAAATGGTCCGACAACGAA AAACGCTATTCCGCCCTGATCCAGGGGATGGACAAGAGCCTGGGCGACATCCGGGAATACCTGAAAAAAAACAATCTGGA TAAAAATACCGTCATCATCTTCATGGCGGACAACGGGGGCCTTGCCATCAGCGGGCGCATGGGCAACAAGGAATCCAATT ACCCGCTTAGCTTCGGCAAGGGTTCCAACCGGGAAGGCGGCATCCGGGAACCGATGATCGTCTACTGGCCCGGGGTCACG AAGGCGGAAAGCGTCTGCACTACTCCCGTCATCATTGAAGACTTTTTCCCCACCATTCTGGAAATAGCAGGAGCAAAAAA AATTCAGGCGCCTCAGGTTGTGGACGGCAAAAGCTTTGTTGCCCTGCTGAAAGGCGGCAGCATGAATCCCAACCGCTCCC TGCTCTTCCACACGCCCAACGTATGGGGGGAAGGGAACGGAAACAACTCCCTTTATTCCCCCAGCACGGCCATGCGCCAG GGGGACTGGAAGCTTATCTACTGGCACCCTGACCAGAAGTTCGAACTCTTCAACCTCAAGGAGGACATCAGCGAAGAGCA CAACCTGGCGGAACAGCAGCCGGAACGCGTTAAGGTCATGGCCAGGACCATGACCACCCTGCTCAAGGAGCGCAAGGCCC AAATGCCCACCTACAAGAAGAATAATCCCGCCGGAGCCCGTGAAGGCGCTCCCGTACCGTGGCCGGACCAGGCGGCGGCC AGGCTGTAA
Upstream 100 bases:
>100_bases AAAAACGGGGCGTTCCCGAACAAACTGCCGCGGGAATACGAATCCTTGACAGAAACGTCCGTCTCATGCGTTATTATAAT AAGTACTGGTTTTCTTAGTA
Downstream 100 bases:
>100_bases GTAAAGGCATCTCCATCCCTCCCTGGAAAGCCGCATTATTCCCTTTTCTTTTAAGAAAACAGGGAGTATGGTGCGGCTTT CCCGTTTTTATTCCCTTTCA
Product: sulfatase
Products: A Phenol; Sulfate. [C]
Alternate protein names: NA
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MNISRIAAFLIPFLLGSACSASAASVKASRAAEPKRPNIILFLVDDMGWQDTSLPFWREEDGTPKPTFLNKRYRTPNMEA LGKQGMVFTNAYAQPICSPSRCSLMSGMNSARHRVTNWTLLRDQTTDAGHQALKAPADWSVNGIQPAGTRASGTTHLPLT EEKIQYRMEKPFTQVLGLPALLKKQGYTTIHCGKAHFGSKNTPGANPRLFGFDYNIAGTEIGGPADYRGSRKYGTGNFHV RGLDENNYYENDTFLTEALTQEALKRLDAIRKNPREADKPFYLYMSHYAIHAPFDMRGYDKRFAEEYSNPNDGHKWSDNE KRYSALIQGMDKSLGDIREYLKKNNLDKNTVIIFMADNGGLAISGRMGNKESNYPLSFGKGSNREGGIREPMIVYWPGVT KAESVCTTPVIIEDFFPTILEIAGAKKIQAPQVVDGKSFVALLKGGSMNPNRSLLFHTPNVWGEGNGNNSLYSPSTAMRQ GDWKLIYWHPDQKFELFNLKEDISEEHNLAEQQPERVKVMARTMTTLLKERKAQMPTYKKNNPAGAREGAPVPWPDQAAA RL
Sequences:
>Translated_562_residues MNISRIAAFLIPFLLGSACSASAASVKASRAAEPKRPNIILFLVDDMGWQDTSLPFWREEDGTPKPTFLNKRYRTPNMEA LGKQGMVFTNAYAQPICSPSRCSLMSGMNSARHRVTNWTLLRDQTTDAGHQALKAPADWSVNGIQPAGTRASGTTHLPLT EEKIQYRMEKPFTQVLGLPALLKKQGYTTIHCGKAHFGSKNTPGANPRLFGFDYNIAGTEIGGPADYRGSRKYGTGNFHV RGLDENNYYENDTFLTEALTQEALKRLDAIRKNPREADKPFYLYMSHYAIHAPFDMRGYDKRFAEEYSNPNDGHKWSDNE KRYSALIQGMDKSLGDIREYLKKNNLDKNTVIIFMADNGGLAISGRMGNKESNYPLSFGKGSNREGGIREPMIVYWPGVT KAESVCTTPVIIEDFFPTILEIAGAKKIQAPQVVDGKSFVALLKGGSMNPNRSLLFHTPNVWGEGNGNNSLYSPSTAMRQ GDWKLIYWHPDQKFELFNLKEDISEEHNLAEQQPERVKVMARTMTTLLKERKAQMPTYKKNNPAGAREGAPVPWPDQAAA RL >Mature_562_residues MNISRIAAFLIPFLLGSACSASAASVKASRAAEPKRPNIILFLVDDMGWQDTSLPFWREEDGTPKPTFLNKRYRTPNMEA LGKQGMVFTNAYAQPICSPSRCSLMSGMNSARHRVTNWTLLRDQTTDAGHQALKAPADWSVNGIQPAGTRASGTTHLPLT EEKIQYRMEKPFTQVLGLPALLKKQGYTTIHCGKAHFGSKNTPGANPRLFGFDYNIAGTEIGGPADYRGSRKYGTGNFHV RGLDENNYYENDTFLTEALTQEALKRLDAIRKNPREADKPFYLYMSHYAIHAPFDMRGYDKRFAEEYSNPNDGHKWSDNE KRYSALIQGMDKSLGDIREYLKKNNLDKNTVIIFMADNGGLAISGRMGNKESNYPLSFGKGSNREGGIREPMIVYWPGVT KAESVCTTPVIIEDFFPTILEIAGAKKIQAPQVVDGKSFVALLKGGSMNPNRSLLFHTPNVWGEGNGNNSLYSPSTAMRQ GDWKLIYWHPDQKFELFNLKEDISEEHNLAEQQPERVKVMARTMTTLLKERKAQMPTYKKNNPAGAREGAPVPWPDQAAA RL
Specific function: Unknown
COG id: COG3119
COG function: function code P; Arylsulfatase A and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sulfatase family [H]
Homologues:
Organism=Homo sapiens, GI109389362, Length=536, Percent_Identity=25.3731343283582, Blast_Score=135, Evalue=7e-32, Organism=Homo sapiens, GI38569405, Length=560, Percent_Identity=26.6071428571429, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI4503899, Length=436, Percent_Identity=30.9633027522936, Blast_Score=132, Evalue=1e-30, Organism=Homo sapiens, GI38569407, Length=436, Percent_Identity=28.8990825688073, Blast_Score=122, Evalue=7e-28, Organism=Homo sapiens, GI59797060, Length=559, Percent_Identity=23.7924865831843, Blast_Score=119, Evalue=6e-27, Organism=Homo sapiens, GI53831991, Length=502, Percent_Identity=25.0996015936255, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI45430057, Length=546, Percent_Identity=24.3589743589744, Blast_Score=96, Evalue=9e-20, Organism=Homo sapiens, GI157266309, Length=582, Percent_Identity=23.8831615120275, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI146229331, Length=500, Percent_Identity=23.2, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI146229329, Length=500, Percent_Identity=23.2, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI6005990, Length=500, Percent_Identity=23.2, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI146229324, Length=500, Percent_Identity=23.2, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI146229327, Length=264, Percent_Identity=26.1363636363636, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI39930577, Length=221, Percent_Identity=26.6968325791855, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI71852584, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=5e-12, Organism=Escherichia coli, GI1790233, Length=431, Percent_Identity=26.2180974477958, Blast_Score=112, Evalue=8e-26, Organism=Escherichia coli, GI87081924, Length=550, Percent_Identity=25.0909090909091, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI115533416, Length=517, Percent_Identity=23.5976789168279, Blast_Score=108, Evalue=1e-23, Organism=Caenorhabditis elegans, GI115533418, Length=509, Percent_Identity=23.5756385068762, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI281363223, Length=491, Percent_Identity=27.4949083503055, Blast_Score=143, Evalue=3e-34, Organism=Drosophila melanogaster, GI24666109, Length=472, Percent_Identity=26.271186440678, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI281366397, Length=492, Percent_Identity=23.780487804878, Blast_Score=123, Evalue=4e-28, Organism=Drosophila melanogaster, GI281366395, Length=492, Percent_Identity=23.780487804878, Blast_Score=123, Evalue=4e-28, Organism=Drosophila melanogaster, GI24666163, Length=492, Percent_Identity=23.780487804878, Blast_Score=123, Evalue=4e-28, Organism=Drosophila melanogaster, GI24666175, Length=435, Percent_Identity=25.2873563218391, Blast_Score=111, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: 3.1.6.1 [C]
Molecular weight: Translated: 62850; Mature: 62850
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNISRIAAFLIPFLLGSACSASAASVKASRAAEPKRPNIILFLVDDMGWQDTSLPFWREE CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEECC DGTPKPTFLNKRYRTPNMEALGKQGMVFTNAYAQPICSPSRCSLMSGMNSARHRVTNWTL CCCCCCCCCCCCCCCCCHHHHCCCCEEEECHHHCCCCCCHHHHHHHCCCHHHHHHCEEEE LRDQTTDAGHQALKAPADWSVNGIQPAGTRASGTTHLPLTEEKIQYRMEKPFTQVLGLPA EECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCHHHHHCCHH LLKKQGYTTIHCGKAHFGSKNTPGANPRLFGFDYNIAGTEIGGPADYRGSRKYGTGNFHV HHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE RGLDENNYYENDTFLTEALTQEALKRLDAIRKNPREADKPFYLYMSHYAIHAPFDMRGYD EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCHH KRFAEEYSNPNDGHKWSDNEKRYSALIQGMDKSLGDIREYLKKNNLDKNTVIIFMADNGG HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC LAISGRMGNKESNYPLSFGKGSNREGGIREPMIVYWPGVTKAESVCTTPVIIEDFFPTIL EEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHH EIAGAKKIQAPQVVDGKSFVALLKGGSMNPNRSLLFHTPNVWGEGNGNNSLYSPSTAMRQ HHHCCCCCCCCCEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEECCHHHHHC GDWKLIYWHPDQKFELFNLKEDISEEHNLAEQQPERVKVMARTMTTLLKERKAQMPTYKK CCEEEEEECCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC NNPAGAREGAPVPWPDQAAARL CCCCCCCCCCCCCCCCHHHCCC >Mature Secondary Structure MNISRIAAFLIPFLLGSACSASAASVKASRAAEPKRPNIILFLVDDMGWQDTSLPFWREE CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEECC DGTPKPTFLNKRYRTPNMEALGKQGMVFTNAYAQPICSPSRCSLMSGMNSARHRVTNWTL CCCCCCCCCCCCCCCCCHHHHCCCCEEEECHHHCCCCCCHHHHHHHCCCHHHHHHCEEEE LRDQTTDAGHQALKAPADWSVNGIQPAGTRASGTTHLPLTEEKIQYRMEKPFTQVLGLPA EECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCHHHHHCCHH LLKKQGYTTIHCGKAHFGSKNTPGANPRLFGFDYNIAGTEIGGPADYRGSRKYGTGNFHV HHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE RGLDENNYYENDTFLTEALTQEALKRLDAIRKNPREADKPFYLYMSHYAIHAPFDMRGYD EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCCHH KRFAEEYSNPNDGHKWSDNEKRYSALIQGMDKSLGDIREYLKKNNLDKNTVIIFMADNGG HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC LAISGRMGNKESNYPLSFGKGSNREGGIREPMIVYWPGVTKAESVCTTPVIIEDFFPTIL EEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHH EIAGAKKIQAPQVVDGKSFVALLKGGSMNPNRSLLFHTPNVWGEGNGNNSLYSPSTAMRQ HHHCCCCCCCCCEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEECCHHHHHC GDWKLIYWHPDQKFELFNLKEDISEEHNLAEQQPERVKVMARTMTTLLKERKAQMPTYKK CCEEEEEECCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC NNPAGAREGAPVPWPDQAAARL CCCCCCCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: A Phenol Sulfate; H2O [C]
Specific reaction: A Phenol Sulfate + H2O = A Phenol + Sulfate. [C]
General reaction: Sulfuric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]