Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736204
Identifier: 187736204
GI number: 187736204
Start: 2087399
End: 2088991
Strand: Direct
Name: 187736204
Synonym: Amuc_1717
Alternate gene names: NA
Gene position: 2087399-2088991 (Clockwise)
Preceding gene: 187736203
Following gene: 187736208
Centisome position: 78.35
GC content: 55.3
Gene sequence:
>1593_bases ATGAGTTCCGAGCGCCATTTTTCCAGTAAGCCCTACCGCCCCGCACGCAAGAAAAAGTCTTATTGGAAGCCGGTCCTCTT TTTGATCCTCCTGGGAGGACTCTGGTTCGGTTATATCCAGTACTGGCCTACGATAGAAGGGTGGTTCAAGCCGACCATCC ATGAAGTGCACAGCCAGACGCAGGCCATGGGGCATTTGCAGGATATGCTGGCTTCATGGAACGGTTCCGATGCAGAGCTG GCGCAGATGGCATCCTCCGTGGACAAGCAGGTGGAATGGATGAATTCTCCCGAAGCCAGAGATTCCTTTGCATGGCTTCT GGCGGTGGAAATGGACCGGCGCGGCATGCTGAAAGAATCCGAACCTATGCTGGCTGCTCTTCTGGAAAAAAAGCTGGCTG CTTCCTCCTCCATGGCGGCGGAGGACCATACCCGCCTTCTGGGCGTCAGCCTGAACTGGGCGCGGGAATTCGCCCGCCGC AAGCATGATGCTGTGGCGGAAAAGCTTTATGAAGTGATTTTGAAAAATACGCCGGAAGACCAGGTTTCCATCCGTTTAGC GTGCTTGGAGCCATTAATCCATTATGCGTACGACCAGGCCAGGTTTGAGCGTTTTTCCGCGTTGTGCAAGCAGGCTGTTT CTCCTGTCATGAGGAGCATGCTGAATAAGCCGGAGGATGTGAAGAGCATGGTGAAAATCCTGTTGCTTCAGGATACCCTG CCAGACAAGACCACCGGGTTGCCCGGTGGCACAGGGAGTGCGATTGCACGGGAGCTTCTTACTAAATTCCGCCTGACCGC CAATCCGGACATGGGCCGCATTATTCTGAATGAATTGAAGATGCCGCTGAACACGCGCCGGAAGTATTCCCAGGAGGAAT TGAAGACCATGGCCGACCAGCTGGAAGCGGCCCTGATTTGCTTCCGTGCAGCTGAAACGGAGATGGACTGCACGCCGGAG ACAATGCTTGCCTTGGCACGGGTAAGGATGCAGATGGGGGATTTGAGAGAGGCCTCCCGCCTGCTGTCCCGTGCAGAAGG GGCAGCCATGACGCTTGGCGTGGATGCTCCCCGTATTTTGAGCGGCTCCAGCCTGAGCCAGGATATTGCGTCCATGCGGT CCCAGCTTGAAAAATACAGCCAGGCAGAGGCTTTGGTGAAACGGGCTTATGAAGATGTGAATGTTGCCGCAGCTTTCCTG AAGGCGCGGGATTACGATCAGGCGGTGAAGTATCTGGAGCAGGCAATGAAAGTGGCTCGTGAAAATACCACGTTTGTTCA GGCTCTTCAGCCGGTCATTCTGAATCTTCAGGCGGAGATAAGCGCCGGCAGGGAACAATGGGCTCTGTCGGAGTCCCAAT ATGGAAAGTTGATTGCGGAGTGGGATGCGTTGACTCCGGAAGATAAGGAAAAACTCCGGAACAATCTGGCCTCCATCCAG TTGGGAGAGCTTTACAATGAAATTCACCGCAACTGGGCTGGTGTGTGCCTCAAGCAAAAACGAACCACAGAGGCCCGCAG GGTGCTGGGGAAGATAGGAGAGGTGCCGGCTGAAGAACCGGAGAGGCCTGCTTCGCGCCGACGCCGCAGATAG
Upstream 100 bases:
>100_bases ACTCCAGATCTTCACGGAGGTAGGATGCGAGGGGCTTCGTAAGACGTTGCGAGGCGTTTATTTTGCTTGATTTGTGCCGT CTTTTTGGCTCAATGCCTGC
Downstream 100 bases:
>100_bases CAGACCCCTTCCTTCAGTTAGGCCGTTCCTTTTTTGGAAAGGCAAAGTTCTCCATTGGCAGATGCCGGAGGGGCTCAGAG TTCCCAGAGGCTCCGGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 530; Mature: 529
Protein sequence:
>530_residues MSSERHFSSKPYRPARKKKSYWKPVLFLILLGGLWFGYIQYWPTIEGWFKPTIHEVHSQTQAMGHLQDMLASWNGSDAEL AQMASSVDKQVEWMNSPEARDSFAWLLAVEMDRRGMLKESEPMLAALLEKKLAASSSMAAEDHTRLLGVSLNWAREFARR KHDAVAEKLYEVILKNTPEDQVSIRLACLEPLIHYAYDQARFERFSALCKQAVSPVMRSMLNKPEDVKSMVKILLLQDTL PDKTTGLPGGTGSAIARELLTKFRLTANPDMGRIILNELKMPLNTRRKYSQEELKTMADQLEAALICFRAAETEMDCTPE TMLALARVRMQMGDLREASRLLSRAEGAAMTLGVDAPRILSGSSLSQDIASMRSQLEKYSQAEALVKRAYEDVNVAAAFL KARDYDQAVKYLEQAMKVARENTTFVQALQPVILNLQAEISAGREQWALSESQYGKLIAEWDALTPEDKEKLRNNLASIQ LGELYNEIHRNWAGVCLKQKRTTEARRVLGKIGEVPAEEPERPASRRRRR
Sequences:
>Translated_530_residues MSSERHFSSKPYRPARKKKSYWKPVLFLILLGGLWFGYIQYWPTIEGWFKPTIHEVHSQTQAMGHLQDMLASWNGSDAEL AQMASSVDKQVEWMNSPEARDSFAWLLAVEMDRRGMLKESEPMLAALLEKKLAASSSMAAEDHTRLLGVSLNWAREFARR KHDAVAEKLYEVILKNTPEDQVSIRLACLEPLIHYAYDQARFERFSALCKQAVSPVMRSMLNKPEDVKSMVKILLLQDTL PDKTTGLPGGTGSAIARELLTKFRLTANPDMGRIILNELKMPLNTRRKYSQEELKTMADQLEAALICFRAAETEMDCTPE TMLALARVRMQMGDLREASRLLSRAEGAAMTLGVDAPRILSGSSLSQDIASMRSQLEKYSQAEALVKRAYEDVNVAAAFL KARDYDQAVKYLEQAMKVARENTTFVQALQPVILNLQAEISAGREQWALSESQYGKLIAEWDALTPEDKEKLRNNLASIQ LGELYNEIHRNWAGVCLKQKRTTEARRVLGKIGEVPAEEPERPASRRRRR >Mature_529_residues SSERHFSSKPYRPARKKKSYWKPVLFLILLGGLWFGYIQYWPTIEGWFKPTIHEVHSQTQAMGHLQDMLASWNGSDAELA QMASSVDKQVEWMNSPEARDSFAWLLAVEMDRRGMLKESEPMLAALLEKKLAASSSMAAEDHTRLLGVSLNWAREFARRK HDAVAEKLYEVILKNTPEDQVSIRLACLEPLIHYAYDQARFERFSALCKQAVSPVMRSMLNKPEDVKSMVKILLLQDTLP DKTTGLPGGTGSAIARELLTKFRLTANPDMGRIILNELKMPLNTRRKYSQEELKTMADQLEAALICFRAAETEMDCTPET MLALARVRMQMGDLREASRLLSRAEGAAMTLGVDAPRILSGSSLSQDIASMRSQLEKYSQAEALVKRAYEDVNVAAAFLK ARDYDQAVKYLEQAMKVARENTTFVQALQPVILNLQAEISAGREQWALSESQYGKLIAEWDALTPEDKEKLRNNLASIQL GELYNEIHRNWAGVCLKQKRTTEARRVLGKIGEVPAEEPERPASRRRRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60096; Mature: 59965
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSERHFSSKPYRPARKKKSYWKPVLFLILLGGLWFGYIQYWPTIEGWFKPTIHEVHSQT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH QAMGHLQDMLASWNGSDAELAQMASSVDKQVEWMNSPEARDSFAWLLAVEMDRRGMLKES HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCCCCCCCC EPMLAALLEKKLAASSSMAAEDHTRLLGVSLNWAREFARRKHDAVAEKLYEVILKNTPED CHHHHHHHHHHHHHHHHCCHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH QVSIRLACLEPLIHYAYDQARFERFSALCKQAVSPVMRSMLNKPEDVKSMVKILLLQDTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC PDKTTGLPGGTGSAIARELLTKFRLTANPDMGRIILNELKMPLNTRRKYSQEELKTMADQ CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH LEAALICFRAAETEMDCTPETMLALARVRMQMGDLREASRLLSRAEGAAMTLGVDAPRIL HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC SGSSLSQDIASMRSQLEKYSQAEALVKRAYEDVNVAAAFLKARDYDQAVKYLEQAMKVAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ENTTFVQALQPVILNLQAEISAGREQWALSESQYGKLIAEWDALTPEDKEKLRNNLASIQ CCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LGELYNEIHRNWAGVCLKQKRTTEARRVLGKIGEVPAEEPERPASRRRRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC >Mature Secondary Structure SSERHFSSKPYRPARKKKSYWKPVLFLILLGGLWFGYIQYWPTIEGWFKPTIHEVHSQT CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH QAMGHLQDMLASWNGSDAELAQMASSVDKQVEWMNSPEARDSFAWLLAVEMDRRGMLKES HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCCCCCCCC EPMLAALLEKKLAASSSMAAEDHTRLLGVSLNWAREFARRKHDAVAEKLYEVILKNTPED CHHHHHHHHHHHHHHHHCCHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH QVSIRLACLEPLIHYAYDQARFERFSALCKQAVSPVMRSMLNKPEDVKSMVKILLLQDTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC PDKTTGLPGGTGSAIARELLTKFRLTANPDMGRIILNELKMPLNTRRKYSQEELKTMADQ CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH LEAALICFRAAETEMDCTPETMLALARVRMQMGDLREASRLLSRAEGAAMTLGVDAPRIL HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC SGSSLSQDIASMRSQLEKYSQAEALVKRAYEDVNVAAAFLKARDYDQAVKYLEQAMKVAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ENTTFVQALQPVILNLQAEISAGREQWALSESQYGKLIAEWDALTPEDKEKLRNNLASIQ CCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LGELYNEIHRNWAGVCLKQKRTTEARRVLGKIGEVPAEEPERPASRRRRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA