Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is sucB [H]
Identifier: 187736179
GI number: 187736179
Start: 2055566
End: 2056657
Strand: Reverse
Name: sucB [H]
Synonym: Amuc_1692
Alternate gene names: 187736179
Gene position: 2056657-2055566 (Counterclockwise)
Preceding gene: 187736180
Following gene: 187736174
Centisome position: 77.2
GC content: 58.42
Gene sequence:
>1092_bases ATGAGCGACATCCTGACTCCCAACTTTGGAGAATCCATCACCTCCGCCACCGTAGCCGCGTGGCACAAGAATGCCGGCGA CCCGGTAGCCAAAGGCGACACTCTGGTGACGCTGGAAACGGACAAGGTTTCCACGGATTTGGAGGCGGATGAAAGCGGCG TGCTGGAAATCCTCGTCCCGGAAGGGGCGGAAGCCCCCATCGGCGCGGTTTTAGGCCGCATTTCCCCCCTTGACGGAAGT TCCGCCGCACCGCCCTCCGTACCACTGGAAACGCGGGAGAAACCCGCTTCCGGTCCCTCCTCACCTGTGACTGGCGCCCC GGAACAAAAGCCGGAAAAGAAAACATCCTCACCGGATCAGACAACCTCCGGAAAAAATGGGAAAACAGTAAAGGAGGCTT CTCCGCGCTTCATCAGAAAACCCATGAGCCCGTTGCGCCGTACCATCGCGGCACGGTTGGTAGAGGCCCAGCACCAGGCG GCCATCCTGACTACCTTCAACGAATGCGACATGTCCTCCGTGATGGAACTCCGCAAACAATTCAATGCAGCGTACCGGGA ACGGTACGGAACCAAACTCGGTTTCATGAGCTTCTTTATCAAGGCCGTAGTCAAAGCATTGCAGGAAGTGCCCCAGGTCA ACGCCAGAATAGACGGTACGGACATCGTGGAAAACCTGTACTATGACATCTCCATAGCCATCGGCACAGATAAGGGTCTC GTCGTCCCCGTGCTGCGGGACTGCGACCGGAAAACGCTTCCGGAGCTGGAACTGGAACTCGCTTCCCTGACGGAAAAAGC ACGCAGGGGAAACCTGTCCATGCAGAATCTGCAAGGCGGCTGCTTCACCATCTCCAACGGCGGAACATATGGGTCGCTTC TTTCCACGCCCATCCTGAACCCGCCCCAGAGCGGCATTCTGGGCATGCATGCCATCCAGGAACGCCCCGTGGTCCGGGAC GGCCAAATCACCGCCCGGCCCATGATGTACCTGGCCCTTTCCTACGACCACCGCCTGGTGGACGGCAAGCAGGCCGTGCA ATTCCTCATTACCGTAAAAAATGCCGTGGAAAACCCGGTGTTCGAGCTGTGA
Upstream 100 bases:
>100_bases CCCTGCGGAGGGGGCCAAAGCGCTGCACGCCGCCGCACAAAAAAGACTCATCGCCGCTGCCTTCGGGCCGCGGGCCCAAT CCTGAACCCATTTTACTCCC
Downstream 100 bases:
>100_bases GGAACCGTGGGAAAAAGACTAAAGAAGAAAGACTGAATGCCTTTCCCGCTTTGGAGTATTTTCCCGGAAATCAGTCCTTT CGGCGCGTTGCCCCGGAAAA
Product: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
Products: NA
Alternate protein names: 2-oxoglutarate dehydrogenase complex component E2; OGDC-E2; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [H]
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MSDILTPNFGESITSATVAAWHKNAGDPVAKGDTLVTLETDKVSTDLEADESGVLEILVPEGAEAPIGAVLGRISPLDGS SAAPPSVPLETREKPASGPSSPVTGAPEQKPEKKTSSPDQTTSGKNGKTVKEASPRFIRKPMSPLRRTIAARLVEAQHQA AILTTFNECDMSSVMELRKQFNAAYRERYGTKLGFMSFFIKAVVKALQEVPQVNARIDGTDIVENLYYDISIAIGTDKGL VVPVLRDCDRKTLPELELELASLTEKARRGNLSMQNLQGGCFTISNGGTYGSLLSTPILNPPQSGILGMHAIQERPVVRD GQITARPMMYLALSYDHRLVDGKQAVQFLITVKNAVENPVFEL
Sequences:
>Translated_363_residues MSDILTPNFGESITSATVAAWHKNAGDPVAKGDTLVTLETDKVSTDLEADESGVLEILVPEGAEAPIGAVLGRISPLDGS SAAPPSVPLETREKPASGPSSPVTGAPEQKPEKKTSSPDQTTSGKNGKTVKEASPRFIRKPMSPLRRTIAARLVEAQHQA AILTTFNECDMSSVMELRKQFNAAYRERYGTKLGFMSFFIKAVVKALQEVPQVNARIDGTDIVENLYYDISIAIGTDKGL VVPVLRDCDRKTLPELELELASLTEKARRGNLSMQNLQGGCFTISNGGTYGSLLSTPILNPPQSGILGMHAIQERPVVRD GQITARPMMYLALSYDHRLVDGKQAVQFLITVKNAVENPVFEL >Mature_362_residues SDILTPNFGESITSATVAAWHKNAGDPVAKGDTLVTLETDKVSTDLEADESGVLEILVPEGAEAPIGAVLGRISPLDGSS AAPPSVPLETREKPASGPSSPVTGAPEQKPEKKTSSPDQTTSGKNGKTVKEASPRFIRKPMSPLRRTIAARLVEAQHQAA ILTTFNECDMSSVMELRKQFNAAYRERYGTKLGFMSFFIKAVVKALQEVPQVNARIDGTDIVENLYYDISIAIGTDKGLV VPVLRDCDRKTLPELELELASLTEKARRGNLSMQNLQGGCFTISNGGTYGSLLSTPILNPPQSGILGMHAIQERPVVRDG QITARPMMYLALSYDHRLVDGKQAVQFLITVKNAVENPVFEL
Specific function: The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components:2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and l
COG id: COG0508
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 lipoyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI19923748, Length=223, Percent_Identity=52.4663677130045, Blast_Score=245, Evalue=4e-65, Organism=Homo sapiens, GI203098816, Length=231, Percent_Identity=32.9004329004329, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI203098753, Length=231, Percent_Identity=32.9004329004329, Blast_Score=133, Evalue=3e-31, Organism=Homo sapiens, GI31711992, Length=229, Percent_Identity=33.6244541484716, Blast_Score=129, Evalue=5e-30, Organism=Homo sapiens, GI110671329, Length=416, Percent_Identity=25.4807692307692, Blast_Score=115, Evalue=7e-26, Organism=Homo sapiens, GI260898739, Length=166, Percent_Identity=33.7349397590361, Blast_Score=103, Evalue=3e-22, Organism=Escherichia coli, GI1786946, Length=398, Percent_Identity=41.4572864321608, Blast_Score=317, Evalue=6e-88, Organism=Escherichia coli, GI1786305, Length=199, Percent_Identity=35.1758793969849, Blast_Score=138, Evalue=6e-34, Organism=Caenorhabditis elegans, GI25146366, Length=398, Percent_Identity=39.1959798994975, Blast_Score=273, Evalue=7e-74, Organism=Caenorhabditis elegans, GI17560088, Length=433, Percent_Identity=27.4826789838337, Blast_Score=147, Evalue=7e-36, Organism=Caenorhabditis elegans, GI17537937, Length=407, Percent_Identity=24.3243243243243, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17538894, Length=220, Percent_Identity=31.8181818181818, Blast_Score=108, Evalue=5e-24, Organism=Saccharomyces cerevisiae, GI6320352, Length=387, Percent_Identity=40.8268733850129, Blast_Score=275, Evalue=7e-75, Organism=Saccharomyces cerevisiae, GI6324258, Length=227, Percent_Identity=29.0748898678414, Blast_Score=116, Evalue=5e-27, Organism=Drosophila melanogaster, GI24645909, Length=221, Percent_Identity=55.6561085972851, Blast_Score=262, Evalue=3e-70, Organism=Drosophila melanogaster, GI24582497, Length=222, Percent_Identity=31.981981981982, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI20129315, Length=222, Percent_Identity=31.981981981982, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI18859875, Length=200, Percent_Identity=34.5, Blast_Score=117, Evalue=2e-26,
Paralogues:
None
Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3096 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003016 - InterPro: IPR001078 - InterPro: IPR000089 - InterPro: IPR023213 - InterPro: IPR004167 - InterPro: IPR011053 - InterPro: IPR006255 [H]
Pfam domain/function: PF00198 2-oxoacid_dh; PF00364 Biotin_lipoyl; PF02817 E3_binding [H]
EC number: =2.3.1.61 [H]
Molecular weight: Translated: 39159; Mature: 39028
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: PS50968 BIOTINYL_LIPOYL ; PS00189 LIPOYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDILTPNFGESITSATVAAWHKNAGDPVAKGDTLVTLETDKVSTDLEADESGVLEILVP CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEC EGAEAPIGAVLGRISPLDGSSAAPPSVPLETREKPASGPSSPVTGAPEQKPEKKTSSPDQ CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TTSGKNGKTVKEASPRFIRKPMSPLRRTIAARLVEAQHQAAILTTFNECDMSSVMELRKQ CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHH FNAAYRERYGTKLGFMSFFIKAVVKALQEVPQVNARIDGTDIVENLYYDISIAIGTDKGL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEEEEECCCCE VVPVLRDCDRKTLPELELELASLTEKARRGNLSMQNLQGGCFTISNGGTYGSLLSTPILN EEHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCHHHHHCCCCC PPQSGILGMHAIQERPVVRDGQITARPMMYLALSYDHRLVDGKQAVQFLITVKNAVENPV CCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHCCHHHHHHHHHHHHHHHCCCC FEL CCC >Mature Secondary Structure SDILTPNFGESITSATVAAWHKNAGDPVAKGDTLVTLETDKVSTDLEADESGVLEILVP CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEC EGAEAPIGAVLGRISPLDGSSAAPPSVPLETREKPASGPSSPVTGAPEQKPEKKTSSPDQ CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TTSGKNGKTVKEASPRFIRKPMSPLRRTIAARLVEAQHQAAILTTFNECDMSSVMELRKQ CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHH FNAAYRERYGTKLGFMSFFIKAVVKALQEVPQVNARIDGTDIVENLYYDISIAIGTDKGL HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEEEEECCCCE VVPVLRDCDRKTLPELELELASLTEKARRGNLSMQNLQGGCFTISNGGTYGSLLSTPILN EEHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCHHHHHCCCCC PPQSGILGMHAIQERPVVRDGQITARPMMYLALSYDHRLVDGKQAVQFLITVKNAVENPV CCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHCCHHHHHHHHHHHHHHHCCCC FEL CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12874367 [H]