Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736152
Identifier: 187736152
GI number: 187736152
Start: 2010972
End: 2011913
Strand: Reverse
Name: 187736152
Synonym: Amuc_1665
Alternate gene names: NA
Gene position: 2011913-2010972 (Counterclockwise)
Preceding gene: 187736155
Following gene: 187736150
Centisome position: 75.52
GC content: 42.04
Gene sequence:
>942_bases ATGAACGACCGCTTAACTATTTCACTTTTTGAGCTTTTTGAAAAATTCCCCAATGAGGAATCAGCTAAAAAGTATTTAGA GGAAAAGCGGTGGGGCGATAAGGTAGTTTGCCCGTTCTGCGGGAAAAGCGAAAAACAGTATAGAGTAAAGAGGAACGGGG TTGAGGGGTATTTTGAATGCGGGGAGTGCGGGAAAGTTTATACTGTGAGGACTGGAACTATTTTTGAGAGAAGCCATGTT CCACTTCATAAATGGATTTTTGCCTTCTATTTAGTAGTGACTTCCAGAAAGGGTATTAGCTCCATGCAACTTTCCAAGGA AATTGGGGTTACGCAAAAAACGGCGTGGTTCATGCTTCAAAGGATTAGGGAAGCATGCAATTCCAACCATGATGACGATG ACAATAACGGCTTTCTATCTGGAATTGTTGAAGCTGATGGGGTGTATATTGGAGGCAAGGAATCCAATAAGCACGAATCT CAGAAATTGAAGGCTGGGCGCGGAATTGTTGGAAAGACAGCGGTTTTAGGAATGAGAGCCAGAGCAGGAAAGGTTTTAGC AAGGGTTATTCCCGACACTTCAAGAGATACAGTTCACCAAGTTTTGAATAAGTATTTGAGCCGGGATTCCGTTCTGGTTA CTGATGAACATGCTTCTTACAAAGAATCACAGTTCAATCATCAGGTGGTGAATCATAGTGCCAAGCAGTATGTTGACGGA ATGGCCCATACTAACGGCATCGAGAGCGTATGGGCGGTTTTGAAGAGAGGATTCTATGGAATCTACCATTCATTCAGCAC AAAACATTTACAGAGATATGTAGATGAATTTGCGTATCGGTTGAATGAGGGAAATGTGAAAATCCACACATGGGTAAGAT TGGATTCTCTTATGGCTAAAGCATTTTCGACGAGAATTACTTACGCCGAATTGAAGAATTGA
Upstream 100 bases:
>100_bases CCAGAACGGAAATCGTATTGGAGCCTTTTTTCAAAGGGCCTTATATACTTGACTTCGGTTTCTCCGTATGCTATTAATTA GCCATACTAAGGAGGCACCC
Downstream 100 bases:
>100_bases CCGCCACCTTGCGAGCAAGGCGACGGCCTAAGTCATGCAAATCAAAGAATCGCCCCCTTCCCCGAAAGGAAGGAGGCCAG TTAATTCACCGCCGAAAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MNDRLTISLFELFEKFPNEESAKKYLEEKRWGDKVVCPFCGKSEKQYRVKRNGVEGYFECGECGKVYTVRTGTIFERSHV PLHKWIFAFYLVVTSRKGISSMQLSKEIGVTQKTAWFMLQRIREACNSNHDDDDNNGFLSGIVEADGVYIGGKESNKHES QKLKAGRGIVGKTAVLGMRARAGKVLARVIPDTSRDTVHQVLNKYLSRDSVLVTDEHASYKESQFNHQVVNHSAKQYVDG MAHTNGIESVWAVLKRGFYGIYHSFSTKHLQRYVDEFAYRLNEGNVKIHTWVRLDSLMAKAFSTRITYAELKN
Sequences:
>Translated_313_residues MNDRLTISLFELFEKFPNEESAKKYLEEKRWGDKVVCPFCGKSEKQYRVKRNGVEGYFECGECGKVYTVRTGTIFERSHV PLHKWIFAFYLVVTSRKGISSMQLSKEIGVTQKTAWFMLQRIREACNSNHDDDDNNGFLSGIVEADGVYIGGKESNKHES QKLKAGRGIVGKTAVLGMRARAGKVLARVIPDTSRDTVHQVLNKYLSRDSVLVTDEHASYKESQFNHQVVNHSAKQYVDG MAHTNGIESVWAVLKRGFYGIYHSFSTKHLQRYVDEFAYRLNEGNVKIHTWVRLDSLMAKAFSTRITYAELKN >Mature_313_residues MNDRLTISLFELFEKFPNEESAKKYLEEKRWGDKVVCPFCGKSEKQYRVKRNGVEGYFECGECGKVYTVRTGTIFERSHV PLHKWIFAFYLVVTSRKGISSMQLSKEIGVTQKTAWFMLQRIREACNSNHDDDDNNGFLSGIVEADGVYIGGKESNKHES QKLKAGRGIVGKTAVLGMRARAGKVLARVIPDTSRDTVHQVLNKYLSRDSVLVTDEHASYKESQFNHQVVNHSAKQYVDG MAHTNGIESVWAVLKRGFYGIYHSFSTKHLQRYVDEFAYRLNEGNVKIHTWVRLDSLMAKAFSTRITYAELKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003220 [H]
Pfam domain/function: PF03811 Ins_element1 [H]
EC number: NA
Molecular weight: Translated: 35813; Mature: 35813
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDRLTISLFELFEKFPNEESAKKYLEEKRWGDKVVCPFCGKSEKQYRVKRNGVEGYFEC CCCCEEEHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEC GECGKVYTVRTGTIFERSHVPLHKWIFAFYLVVTSRKGISSMQLSKEIGVTQKTAWFMLQ CCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH RIREACNSNHDDDDNNGFLSGIVEADGVYIGGKESNKHESQKLKAGRGIVGKTAVLGMRA HHHHHHCCCCCCCCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHH RAGKVLARVIPDTSRDTVHQVLNKYLSRDSVLVTDEHASYKESQFNHQVVNHSAKQYVDG HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH MAHTNGIESVWAVLKRGFYGIYHSFSTKHLQRYVDEFAYRLNEGNVKIHTWVRLDSLMAK HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH AFSTRITYAELKN HHHHHHHHHHHCC >Mature Secondary Structure MNDRLTISLFELFEKFPNEESAKKYLEEKRWGDKVVCPFCGKSEKQYRVKRNGVEGYFEC CCCCEEEHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEC GECGKVYTVRTGTIFERSHVPLHKWIFAFYLVVTSRKGISSMQLSKEIGVTQKTAWFMLQ CCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH RIREACNSNHDDDDNNGFLSGIVEADGVYIGGKESNKHESQKLKAGRGIVGKTAVLGMRA HHHHHHCCCCCCCCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHH RAGKVLARVIPDTSRDTVHQVLNKYLSRDSVLVTDEHASYKESQFNHQVVNHSAKQYVDG HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH MAHTNGIESVWAVLKRGFYGIYHSFSTKHLQRYVDEFAYRLNEGNVKIHTWVRLDSLMAK HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH AFSTRITYAELKN HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6306577; 9847077; 11016950 [H]