Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is dusC [H]
Identifier: 187736134
GI number: 187736134
Start: 1987924
End: 1988982
Strand: Reverse
Name: dusC [H]
Synonym: Amuc_1645
Alternate gene names: 187736134
Gene position: 1988982-1987924 (Counterclockwise)
Preceding gene: 187736136
Following gene: 187736133
Centisome position: 74.66
GC content: 56.94
Gene sequence:
>1059_bases ATGCACAGACCCATGCTCCTGGCCCTGGCCCCCATGAAAGATGTGACGGATCTGGCTTTCCTCAACACATTGAAGGACTT GAATTCCCTGCCGGATTATTTCATCACGGAGTATTTCCGGACGGTGGCCCATCATAAAAAGATGTCGCCATACATTCTGC GCTCCATTGATGAAAATCCTACAGGCCGCCCCATTTACGGACAGCTCGTGGGCCATGAACCGGAATACCTGGCAAGGGAT GCGCAGGTCCTGATGGAACACGCCTGTGCAGGCGTGGATCTGAACATGGGCTGCCCCGCTCCCATCGTATGCCGGAGAAA TGCGGGCGGAGGCATGCTGCGGTCCCTGAAGGCCATGGACGCGGCCCTGGGAGCGCTTCGGGACGTATTGCCCCCCGGAG CCTTCACCGTCAAATGCCGCCTGGGATACGAAACGCCGGACGAGTTTGAACGGATTCTTCCGGTAATTGCCTCCCATTCC CCGGACAGGGTGTGCATCCACGCCCGCACCGTCCGTGAGGGCTACCGCTCCCCAGTACACCCGGAATGGGTGAAATGGGC CGCAGGAATGCTGAAATGCCCAGTAGTCGCCAACGGAAATATTGTGGATGCAGCCACAGCGGAGGCATGGGTGCGGCTGG CCCGGCCAGCTGGGCTGATGATTGGGCGGGCAGCCCTGCGCAATCCCTGGATATTTTCACAGCTTCATTCCCGCTTTCAG GGCCATCCTGCAGCAGACCTTACCTTCCGGAACGTGCTGCACTACATTCGCCGCCTTTATGAACGCACGCGGGAAATGCA GGAACATTATGTGGAGGAAAAACACATCCACCGCATGAAAAAATATCTGGTTTATACCGCGCGGGGACTTCCCGACACTT TTGACCATTACATGAAAAGGGCGAAAACCGCCCGCGATTTCATGCGCATTTGCGAGGATATTCTGGATAACGACGCACCC TTTGCCCCCACTCCGCCGGAAGACACGCATCTCTTTGCCCATTTCCATACCCTTCTTGCGCAAGAGGAAGCTTGTCTCCC TCCCGGAATTCAGGTATGA
Upstream 100 bases:
>100_bases TCTGGCTTTGCGGGTTGAGTCCTGATTCATGCTCCCAGCTTCCACACTTTCCTTCTTTCGTCAAGACAATCACAGCTTGC CAACCGGAGCTTTTCACGGT
Downstream 100 bases:
>100_bases ATTTCAACGTTCATGAATCTGCTGCCTTTCGCCCTTCTCCCGGGCCTGACCGCCGCTATTTGCGCCGCCCATGACGCCAT TCAGGACGGGGTGGAGTTTC
Product: dihydrouridine synthase DuS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENPTGRPIYGQLVGHEPEYLARD AQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMDAALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHS PDRVCIHARTVREGYRSPVHPEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKRAKTARDFMRICEDILDNDAP FAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV
Sequences:
>Translated_352_residues MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENPTGRPIYGQLVGHEPEYLARD AQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMDAALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHS PDRVCIHARTVREGYRSPVHPEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKRAKTARDFMRICEDILDNDAP FAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV >Mature_352_residues MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENPTGRPIYGQLVGHEPEYLARD AQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMDAALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHS PDRVCIHARTVREGYRSPVHPEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKRAKTARDFMRICEDILDNDAP FAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV
Specific function: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs [H]
COG id: COG0042
COG function: function code J; tRNA-dihydrouridine synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dus family. DusC subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788462, Length=299, Percent_Identity=27.7591973244147, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789660, Length=241, Percent_Identity=27.3858921161826, Blast_Score=77, Evalue=2e-15, Organism=Drosophila melanogaster, GI24585320, Length=189, Percent_Identity=30.6878306878307, Blast_Score=84, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001269 - InterPro: IPR018517 [H]
Pfam domain/function: PF01207 Dus [H]
EC number: NA
Molecular weight: Translated: 39965; Mature: 39965
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENP CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCC TGRPIYGQLVGHEPEYLARDAQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMD CCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH AALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHSPDRVCIHARTVREGYRSPVH HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCC PEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ HHHHHHHHHHHCCCEEECCCEECHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHC GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH AKTARDFMRICEDILDNDAPFAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENP CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCC TGRPIYGQLVGHEPEYLARDAQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMD CCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH AALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHSPDRVCIHARTVREGYRSPVH HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCC PEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ HHHHHHHHHHHCCCEEECCCEECHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHC GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH AKTARDFMRICEDILDNDAPFAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9555876 [H]