Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is dusC [H]

Identifier: 187736134

GI number: 187736134

Start: 1987924

End: 1988982

Strand: Reverse

Name: dusC [H]

Synonym: Amuc_1645

Alternate gene names: 187736134

Gene position: 1988982-1987924 (Counterclockwise)

Preceding gene: 187736136

Following gene: 187736133

Centisome position: 74.66

GC content: 56.94

Gene sequence:

>1059_bases
ATGCACAGACCCATGCTCCTGGCCCTGGCCCCCATGAAAGATGTGACGGATCTGGCTTTCCTCAACACATTGAAGGACTT
GAATTCCCTGCCGGATTATTTCATCACGGAGTATTTCCGGACGGTGGCCCATCATAAAAAGATGTCGCCATACATTCTGC
GCTCCATTGATGAAAATCCTACAGGCCGCCCCATTTACGGACAGCTCGTGGGCCATGAACCGGAATACCTGGCAAGGGAT
GCGCAGGTCCTGATGGAACACGCCTGTGCAGGCGTGGATCTGAACATGGGCTGCCCCGCTCCCATCGTATGCCGGAGAAA
TGCGGGCGGAGGCATGCTGCGGTCCCTGAAGGCCATGGACGCGGCCCTGGGAGCGCTTCGGGACGTATTGCCCCCCGGAG
CCTTCACCGTCAAATGCCGCCTGGGATACGAAACGCCGGACGAGTTTGAACGGATTCTTCCGGTAATTGCCTCCCATTCC
CCGGACAGGGTGTGCATCCACGCCCGCACCGTCCGTGAGGGCTACCGCTCCCCAGTACACCCGGAATGGGTGAAATGGGC
CGCAGGAATGCTGAAATGCCCAGTAGTCGCCAACGGAAATATTGTGGATGCAGCCACAGCGGAGGCATGGGTGCGGCTGG
CCCGGCCAGCTGGGCTGATGATTGGGCGGGCAGCCCTGCGCAATCCCTGGATATTTTCACAGCTTCATTCCCGCTTTCAG
GGCCATCCTGCAGCAGACCTTACCTTCCGGAACGTGCTGCACTACATTCGCCGCCTTTATGAACGCACGCGGGAAATGCA
GGAACATTATGTGGAGGAAAAACACATCCACCGCATGAAAAAATATCTGGTTTATACCGCGCGGGGACTTCCCGACACTT
TTGACCATTACATGAAAAGGGCGAAAACCGCCCGCGATTTCATGCGCATTTGCGAGGATATTCTGGATAACGACGCACCC
TTTGCCCCCACTCCGCCGGAAGACACGCATCTCTTTGCCCATTTCCATACCCTTCTTGCGCAAGAGGAAGCTTGTCTCCC
TCCCGGAATTCAGGTATGA

Upstream 100 bases:

>100_bases
TCTGGCTTTGCGGGTTGAGTCCTGATTCATGCTCCCAGCTTCCACACTTTCCTTCTTTCGTCAAGACAATCACAGCTTGC
CAACCGGAGCTTTTCACGGT

Downstream 100 bases:

>100_bases
ATTTCAACGTTCATGAATCTGCTGCCTTTCGCCCTTCTCCCGGGCCTGACCGCCGCTATTTGCGCCGCCCATGACGCCAT
TCAGGACGGGGTGGAGTTTC

Product: dihydrouridine synthase DuS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENPTGRPIYGQLVGHEPEYLARD
AQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMDAALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHS
PDRVCIHARTVREGYRSPVHPEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ
GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKRAKTARDFMRICEDILDNDAP
FAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV

Sequences:

>Translated_352_residues
MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENPTGRPIYGQLVGHEPEYLARD
AQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMDAALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHS
PDRVCIHARTVREGYRSPVHPEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ
GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKRAKTARDFMRICEDILDNDAP
FAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV
>Mature_352_residues
MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENPTGRPIYGQLVGHEPEYLARD
AQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMDAALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHS
PDRVCIHARTVREGYRSPVHPEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ
GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKRAKTARDFMRICEDILDNDAP
FAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV

Specific function: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs [H]

COG id: COG0042

COG function: function code J; tRNA-dihydrouridine synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dus family. DusC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788462, Length=299, Percent_Identity=27.7591973244147, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789660, Length=241, Percent_Identity=27.3858921161826, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24585320, Length=189, Percent_Identity=30.6878306878307, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001269
- InterPro:   IPR018517 [H]

Pfam domain/function: PF01207 Dus [H]

EC number: NA

Molecular weight: Translated: 39965; Mature: 39965

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENP
CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
TGRPIYGQLVGHEPEYLARDAQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMD
CCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
AALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHSPDRVCIHARTVREGYRSPVH
HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCC
PEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ
HHHHHHHHHHHCCCEEECCCEECHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHC
GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AKTARDFMRICEDILDNDAPFAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENP
CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
TGRPIYGQLVGHEPEYLARDAQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMD
CCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
AALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHSPDRVCIHARTVREGYRSPVH
HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCC
PEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQ
HHHHHHHHHHHCCCEEECCCEECHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHC
GHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AKTARDFMRICEDILDNDAPFAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9555876 [H]