Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yngK [H]
Identifier: 187736082
GI number: 187736082
Start: 1916220
End: 1917680
Strand: Reverse
Name: yngK [H]
Synonym: Amuc_1593
Alternate gene names: 187736082
Gene position: 1917680-1916220 (Counterclockwise)
Preceding gene: 187736083
Following gene: 187736081
Centisome position: 71.98
GC content: 63.52
Gene sequence:
>1461_bases ATGACCAGATTTCCCCTGTTCCATGCCTTCTCCTGCTCCCTGCTGGCCCTGGCTTCCCAGGCGCTTGGGTGGCAGACCTC CGGAGAATCCGTTCCCGCTGTCCCCCAGGAATTCCGCGCGGCATGGATATCCACCGTTCATAATATTGACTGGCCCTCCC GTTCCGGCCTCTCCGGAGCAGCCCAGCGCGCGGAGCTGCTGAACATCCTGAATACCTGCGCCCAGTTGAAGCTGAACGCC GTGTTTCTCCAAGTGCGCCCGAACGCCGACGCCCTGTACCGCTCTTCTCTGGAACCGTGGAGCCAATGGCTTTCCGGCCC GGGCGTCAATCCTGGGTATGATCCTCTGGCTTTCGCCATTCAGGAGGCTCACCGCCGCGGCATTGAACTGCACGCCTGGT TCAACCCATTCCGGGCGAAGGCCAACGTCAAGCATGCCGTAGGCCGCAACCATATTTCCCTCACGCGCCCTGATTTGATG AAGCGAAACGGCTCCGTGCTGCTGATAAACCCCAGCGCCTCCGCCTCCCGCGACCACGCGCTGAAGGTTATCATGGATGT CGTGCGCCGCTACGACATTGACGGGGTGCACCTGGACGACTATTTCTACCCCTATCCCACTCCCGGCCGCGCCTGGTCTC CCGCCAGCTTTGGAGACGGGAAATCCCCCTCCCAGCGCCGGGGCTACATTGACGGCTTCGTGCAAGACATGTACAAATCC GTCAAATCTTCCAAACCCTGGGTGCGGGTGGGCGTCAGCCCGTTCGGCATCTGGAGGCCGGGCGTTCCCGGCGGCATTGA AGCGGGAGTGGACGCCTACGAGCATCTGGCGTGCGACGCCCGCAAGTGGCTTTCCCGCGGATGGGTGGATTACCTGGCCC CCCAGCTTTACTGGCGCTGCAGCCCGGCCAAGCAGAGCTTTCCCGCATTGATGCAATGGTGGGCCGCCCAGAACTCCAGA CGCCCGGTGTGGCCCGGCATTGCCACGGCACGTATCATGAGCAGCGAAGACCCGGGCCGCCCCGCCTCTGAAATAGCGGC GCAGGTCAACTACTCCCGCAGCCTTGCCAGAACCGCCCCCGGGCAATGCTTCTGGAGCATCAAATCCATCATGCGGAATG CCGGAGGCATCCAGAAATACCTGAACAGATTGTACCCCTCCATGGCCGTTCCGCCCGCCATGCCCTGGTGCGGAACCGGC ACACCCGGACAACCGCAGAATTTTTATGTGGCGGACAATGGTTCCACCGTAACCCTCTCCTGGCAGCCGTCCGGCAATCC CTCCCGGAAATGGGCCGTCCAGGCGCGCTACGGCAGCCAGTGGGCTACGCGCATCCTTCTGCCGGGCAGCCAGACCCGCG TAACCCTGCCCAAATCCTTCCTGGGGGATGCGGGGTCTGTCGCCGTCAGGGGCGTCAGCGCCTATGGAGCCCAGGGCCCG GCAGCAGCCGCCAGAAGGTAG
Upstream 100 bases:
>100_bases TGAGGGCCGCCTGTCCATGACGGAACCTCCGGCATCCGTCATGGACAGATCCTCCGAATAGGCTTTAAATGTTCCGGAAA CATCCCTCTCCATTCCCGTC
Downstream 100 bases:
>100_bases AAAAGCTTTTTCCCAGCTGCCTCTACAAGAAGAAAAATAGAACACCGAGGTTCCTGTTTTTTGAACAACTCCAAAACAAT CCATGTCTAAACACCCATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MTRFPLFHAFSCSLLALASQALGWQTSGESVPAVPQEFRAAWISTVHNIDWPSRSGLSGAAQRAELLNILNTCAQLKLNA VFLQVRPNADALYRSSLEPWSQWLSGPGVNPGYDPLAFAIQEAHRRGIELHAWFNPFRAKANVKHAVGRNHISLTRPDLM KRNGSVLLINPSASASRDHALKVIMDVVRRYDIDGVHLDDYFYPYPTPGRAWSPASFGDGKSPSQRRGYIDGFVQDMYKS VKSSKPWVRVGVSPFGIWRPGVPGGIEAGVDAYEHLACDARKWLSRGWVDYLAPQLYWRCSPAKQSFPALMQWWAAQNSR RPVWPGIATARIMSSEDPGRPASEIAAQVNYSRSLARTAPGQCFWSIKSIMRNAGGIQKYLNRLYPSMAVPPAMPWCGTG TPGQPQNFYVADNGSTVTLSWQPSGNPSRKWAVQARYGSQWATRILLPGSQTRVTLPKSFLGDAGSVAVRGVSAYGAQGP AAAARR
Sequences:
>Translated_486_residues MTRFPLFHAFSCSLLALASQALGWQTSGESVPAVPQEFRAAWISTVHNIDWPSRSGLSGAAQRAELLNILNTCAQLKLNA VFLQVRPNADALYRSSLEPWSQWLSGPGVNPGYDPLAFAIQEAHRRGIELHAWFNPFRAKANVKHAVGRNHISLTRPDLM KRNGSVLLINPSASASRDHALKVIMDVVRRYDIDGVHLDDYFYPYPTPGRAWSPASFGDGKSPSQRRGYIDGFVQDMYKS VKSSKPWVRVGVSPFGIWRPGVPGGIEAGVDAYEHLACDARKWLSRGWVDYLAPQLYWRCSPAKQSFPALMQWWAAQNSR RPVWPGIATARIMSSEDPGRPASEIAAQVNYSRSLARTAPGQCFWSIKSIMRNAGGIQKYLNRLYPSMAVPPAMPWCGTG TPGQPQNFYVADNGSTVTLSWQPSGNPSRKWAVQARYGSQWATRILLPGSQTRVTLPKSFLGDAGSVAVRGVSAYGAQGP AAAARR >Mature_485_residues TRFPLFHAFSCSLLALASQALGWQTSGESVPAVPQEFRAAWISTVHNIDWPSRSGLSGAAQRAELLNILNTCAQLKLNAV FLQVRPNADALYRSSLEPWSQWLSGPGVNPGYDPLAFAIQEAHRRGIELHAWFNPFRAKANVKHAVGRNHISLTRPDLMK RNGSVLLINPSASASRDHALKVIMDVVRRYDIDGVHLDDYFYPYPTPGRAWSPASFGDGKSPSQRRGYIDGFVQDMYKSV KSSKPWVRVGVSPFGIWRPGVPGGIEAGVDAYEHLACDARKWLSRGWVDYLAPQLYWRCSPAKQSFPALMQWWAAQNSRR PVWPGIATARIMSSEDPGRPASEIAAQVNYSRSLARTAPGQCFWSIKSIMRNAGGIQKYLNRLYPSMAVPPAMPWCGTGT PGQPQNFYVADNGSTVTLSWQPSGNPSRKWAVQARYGSQWATRILLPGSQTRVTLPKSFLGDAGSVAVRGVSAYGAQGPA AAARR
Specific function: Unknown
COG id: COG1649
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Attached to the membrane by a lipid anchor (Potential) [C]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0748 family [H]
Homologues:
Organism=Escherichia coli, GI1787767, Length=353, Percent_Identity=31.728045325779, Blast_Score=187, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003790 - InterPro: IPR017853 [H]
Pfam domain/function: PF02638 DUF187 [H]
EC number: NA
Molecular weight: Translated: 53494; Mature: 53363
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRFPLFHAFSCSLLALASQALGWQTSGESVPAVPQEFRAAWISTVHNIDWPSRSGLSGA CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH AQRAELLNILNTCAQLKLNAVFLQVRPNADALYRSSLEPWSQWLSGPGVNPGYDPLAFAI HHHHHHHHHHHHHHHEEEEEEEEEECCCCHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHH QEAHRRGIELHAWFNPFRAKANVKHAVGRNHISLTRPDLMKRNGSVLLINPSASASRDHA HHHHHCCCEEEEECCCHHHCCCHHHHHCCCCEEECCCHHHHCCCCEEEECCCCCCCHHHH LKVIMDVVRRYDIDGVHLDDYFYPYPTPGRAWSPASFGDGKSPSQRRGYIDGFVQDMYKS HHHHHHHHHHCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHH VKSSKPWVRVGVSPFGIWRPGVPGGIEAGVDAYEHLACDARKWLSRGWVDYLAPQLYWRC HHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHEEEC SPAKQSFPALMQWWAAQNSRRPVWPGIATARIMSSEDPGRPASEIAAQVNYSRSLARTAP CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCC GQCFWSIKSIMRNAGGIQKYLNRLYPSMAVPPAMPWCGTGTPGQPQNFYVADNGSTVTLS CHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE WQPSGNPSRKWAVQARYGSQWATRILLPGSQTRVTLPKSFLGDAGSVAVRGVSAYGAQGP ECCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEECCHHHCCCCCCEEEEEHHHCCCCCC AAAARR HHHCCC >Mature Secondary Structure TRFPLFHAFSCSLLALASQALGWQTSGESVPAVPQEFRAAWISTVHNIDWPSRSGLSGA CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH AQRAELLNILNTCAQLKLNAVFLQVRPNADALYRSSLEPWSQWLSGPGVNPGYDPLAFAI HHHHHHHHHHHHHHHEEEEEEEEEECCCCHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHH QEAHRRGIELHAWFNPFRAKANVKHAVGRNHISLTRPDLMKRNGSVLLINPSASASRDHA HHHHHCCCEEEEECCCHHHCCCHHHHHCCCCEEECCCHHHHCCCCEEEECCCCCCCHHHH LKVIMDVVRRYDIDGVHLDDYFYPYPTPGRAWSPASFGDGKSPSQRRGYIDGFVQDMYKS HHHHHHHHHHCCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHH VKSSKPWVRVGVSPFGIWRPGVPGGIEAGVDAYEHLACDARKWLSRGWVDYLAPQLYWRC HHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHEEEC SPAKQSFPALMQWWAAQNSRRPVWPGIATARIMSSEDPGRPASEIAAQVNYSRSLARTAP CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCC GQCFWSIKSIMRNAGGIQKYLNRLYPSMAVPPAMPWCGTGTPGQPQNFYVADNGSTVTLS CHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE WQPSGNPSRKWAVQARYGSQWATRILLPGSQTRVTLPKSFLGDAGSVAVRGVSAYGAQGP ECCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEECCHHHCCCCCCEEEEEHHHCCCCCC AAAARR HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9387222; 9384377 [H]