Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is 187735994

Identifier: 187735994

GI number: 187735994

Start: 1796305

End: 1797363

Strand: Reverse

Name: 187735994

Synonym: Amuc_1504

Alternate gene names: NA

Gene position: 1797363-1796305 (Counterclockwise)

Preceding gene: 187735998

Following gene: 187735993

Centisome position: 67.47

GC content: 56.66

Gene sequence:

>1059_bases
ATGTCCATGGATTCCAGCTACCAGACTCTGGAAGGCGCCGTTAAAAAGCTTTCCGAAATAGCCTCCACCAGGCACGATCC
CCGCTACCTCCAAGAGTATATCAAAACGGGAATCAACATGGCCCAGTCCGCCGCCTCGGACCATGATTTTACCGTCCTGA
TCCGCTCCGGGCGGGAGATGTACCGCGCCAACTGCGTTTTCGCCCCGTACCGCCACATCCGCAAGATTTCCGTCTTCGGC
TCCGCCCGCATCAGGAATGACGAACCGGCGTATGAAACGGCGAGGGAATTCGCCAGGGAAGCCAGCGAACACGGCTACAT
GGTCATTACCGGAGGCGGACCGGGCATCATGCAGGCAGCCAATGAAGGGGCGGGAGAGCAACGCTCCTTCGGCCTGAACA
TCACCCTGCCGTATGAACAGACCTCCAACCATGTGGTGGCCCACAGCGACAAACTCATCAATTTTTATTACTTTTTCGTC
AGAAAACTGAACTTCGTGGCGGAAAGCGACGCCATGGTGGCATTCCCCGGAGGCTTCGGAACCATGGATGAAGTGTTTGA
AACACTCACTCTGATCCAGACGGGAAAAGCGACCATTTACCCGATCGTCCTTCTGGATTCCCCCGGCAAAACCTTCTGGC
TGAACTGGCTGGCCTTCATTCGCGTGGAACTGGTGGATTCCGGACTGATTTCCGCAGACGATCTTCATCTCATCCATGTC
ACTAAAAATCCGGCGGAAGCCATGGAACACATCGACCGTTTTTACCGGATTTTCCACTCCTACCGTTTTGTCGGAGATTC
CATCGTCATCCGGCTGAATGCGCAGCTTCCCGCCCAGTGGGTGGAACATCTGGAACGGGACTTTTCAGACCTGATTCTGC
CTGGGGGGAAAATGATCCAGAGCGGCCCCCTGCCGGATGAAGCGGACGAACCACACCTGGACCGCCTGCCCCGGCTCGTC
TTCCCCATCAAACGCGGCAACTACGGCAGGCTGAGGTTGCTGATTGACCGCATCAACCAGACGCCCAGCCGAACCTATTC
CCCGCCCACCCATGCCTGA

Upstream 100 bases:

>100_bases
CTGGCATAGTAGGGCAAACCTATCATACCAACTCATGAAGCATCCTGATTTTTTGGACAACAGGGATTTTACAGGTGAAG
ACAAGAAACGCCCCTCCACC

Downstream 100 bases:

>100_bases
CGCCTTTCCCGCATGGGTGATTCCCGTGGTTTTCGGCCTGATGGGGGCCTGCATAGGCTCCTTCCTGAACGTGGTTATCT
ACCGCATGCCGCGGGGCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREMYRANCVFAPYRHIRKISVFG
SARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAANEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFV
RKLNFVAESDAMVAFPGGFGTMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHV
TKNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQSGPLPDEADEPHLDRLPRLV
FPIKRGNYGRLRLLIDRINQTPSRTYSPPTHA

Sequences:

>Translated_352_residues
MSMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREMYRANCVFAPYRHIRKISVFG
SARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAANEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFV
RKLNFVAESDAMVAFPGGFGTMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHV
TKNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQSGPLPDEADEPHLDRLPRLV
FPIKRGNYGRLRLLIDRINQTPSRTYSPPTHA
>Mature_351_residues
SMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREMYRANCVFAPYRHIRKISVFGS
ARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAANEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFVR
KLNFVAESDAMVAFPGGFGTMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHVT
KNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQSGPLPDEADEPHLDRLPRLVF
PIKRGNYGRLRLLIDRINQTPSRTYSPPTHA

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39860; Mature: 39729

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREM
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH
YRANCVFAPYRHIRKISVFGSARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAA
HHHCCEEHHHHHHEEEEEECCCEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHC
NEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFVRKLNFVAESDAMVAFPGGFG
CCCCCCCCCEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
TMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHV
CHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
TKNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQ
ECCHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEC
SGPLPDEADEPHLDRLPRLVFPIKRGNYGRLRLLIDRINQTPSRTYSPPTHA
CCCCCCCCCCCHHHHCCHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREM
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH
YRANCVFAPYRHIRKISVFGSARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAA
HHHCCEEHHHHHHEEEEEECCCEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHC
NEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFVRKLNFVAESDAMVAFPGGFG
CCCCCCCCCEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
TMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHV
CHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
TKNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQ
ECCHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEC
SGPLPDEADEPHLDRLPRLVFPIKRGNYGRLRLLIDRINQTPSRTYSPPTHA
CCCCCCCCCCCHHHHCCHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA