Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735994
Identifier: 187735994
GI number: 187735994
Start: 1796305
End: 1797363
Strand: Reverse
Name: 187735994
Synonym: Amuc_1504
Alternate gene names: NA
Gene position: 1797363-1796305 (Counterclockwise)
Preceding gene: 187735998
Following gene: 187735993
Centisome position: 67.47
GC content: 56.66
Gene sequence:
>1059_bases ATGTCCATGGATTCCAGCTACCAGACTCTGGAAGGCGCCGTTAAAAAGCTTTCCGAAATAGCCTCCACCAGGCACGATCC CCGCTACCTCCAAGAGTATATCAAAACGGGAATCAACATGGCCCAGTCCGCCGCCTCGGACCATGATTTTACCGTCCTGA TCCGCTCCGGGCGGGAGATGTACCGCGCCAACTGCGTTTTCGCCCCGTACCGCCACATCCGCAAGATTTCCGTCTTCGGC TCCGCCCGCATCAGGAATGACGAACCGGCGTATGAAACGGCGAGGGAATTCGCCAGGGAAGCCAGCGAACACGGCTACAT GGTCATTACCGGAGGCGGACCGGGCATCATGCAGGCAGCCAATGAAGGGGCGGGAGAGCAACGCTCCTTCGGCCTGAACA TCACCCTGCCGTATGAACAGACCTCCAACCATGTGGTGGCCCACAGCGACAAACTCATCAATTTTTATTACTTTTTCGTC AGAAAACTGAACTTCGTGGCGGAAAGCGACGCCATGGTGGCATTCCCCGGAGGCTTCGGAACCATGGATGAAGTGTTTGA AACACTCACTCTGATCCAGACGGGAAAAGCGACCATTTACCCGATCGTCCTTCTGGATTCCCCCGGCAAAACCTTCTGGC TGAACTGGCTGGCCTTCATTCGCGTGGAACTGGTGGATTCCGGACTGATTTCCGCAGACGATCTTCATCTCATCCATGTC ACTAAAAATCCGGCGGAAGCCATGGAACACATCGACCGTTTTTACCGGATTTTCCACTCCTACCGTTTTGTCGGAGATTC CATCGTCATCCGGCTGAATGCGCAGCTTCCCGCCCAGTGGGTGGAACATCTGGAACGGGACTTTTCAGACCTGATTCTGC CTGGGGGGAAAATGATCCAGAGCGGCCCCCTGCCGGATGAAGCGGACGAACCACACCTGGACCGCCTGCCCCGGCTCGTC TTCCCCATCAAACGCGGCAACTACGGCAGGCTGAGGTTGCTGATTGACCGCATCAACCAGACGCCCAGCCGAACCTATTC CCCGCCCACCCATGCCTGA
Upstream 100 bases:
>100_bases CTGGCATAGTAGGGCAAACCTATCATACCAACTCATGAAGCATCCTGATTTTTTGGACAACAGGGATTTTACAGGTGAAG ACAAGAAACGCCCCTCCACC
Downstream 100 bases:
>100_bases CGCCTTTCCCGCATGGGTGATTCCCGTGGTTTTCGGCCTGATGGGGGCCTGCATAGGCTCCTTCCTGAACGTGGTTATCT ACCGCATGCCGCGGGGCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MSMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREMYRANCVFAPYRHIRKISVFG SARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAANEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFV RKLNFVAESDAMVAFPGGFGTMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHV TKNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQSGPLPDEADEPHLDRLPRLV FPIKRGNYGRLRLLIDRINQTPSRTYSPPTHA
Sequences:
>Translated_352_residues MSMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREMYRANCVFAPYRHIRKISVFG SARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAANEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFV RKLNFVAESDAMVAFPGGFGTMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHV TKNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQSGPLPDEADEPHLDRLPRLV FPIKRGNYGRLRLLIDRINQTPSRTYSPPTHA >Mature_351_residues SMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREMYRANCVFAPYRHIRKISVFGS ARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAANEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFVR KLNFVAESDAMVAFPGGFGTMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHVT KNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQSGPLPDEADEPHLDRLPRLVF PIKRGNYGRLRLLIDRINQTPSRTYSPPTHA
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39860; Mature: 39729
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREM CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH YRANCVFAPYRHIRKISVFGSARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAA HHHCCEEHHHHHHEEEEEECCCEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHC NEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFVRKLNFVAESDAMVAFPGGFG CCCCCCCCCEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC TMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHV CHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE TKNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQ ECCHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEC SGPLPDEADEPHLDRLPRLVFPIKRGNYGRLRLLIDRINQTPSRTYSPPTHA CCCCCCCCCCCHHHHCCHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SMDSSYQTLEGAVKKLSEIASTRHDPRYLQEYIKTGINMAQSAASDHDFTVLIRSGREM CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH YRANCVFAPYRHIRKISVFGSARIRNDEPAYETAREFAREASEHGYMVITGGGPGIMQAA HHHCCEEHHHHHHEEEEEECCCEECCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHC NEGAGEQRSFGLNITLPYEQTSNHVVAHSDKLINFYYFFVRKLNFVAESDAMVAFPGGFG CCCCCCCCCEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC TMDEVFETLTLIQTGKATIYPIVLLDSPGKTFWLNWLAFIRVELVDSGLISADDLHLIHV CHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE TKNPAEAMEHIDRFYRIFHSYRFVGDSIVIRLNAQLPAQWVEHLERDFSDLILPGGKMIQ ECCHHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEC SGPLPDEADEPHLDRLPRLVFPIKRGNYGRLRLLIDRINQTPSRTYSPPTHA CCCCCCCCCCCHHHHCCHHEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA