Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735990
Identifier: 187735990
GI number: 187735990
Start: 1789023
End: 1789754
Strand: Direct
Name: 187735990
Synonym: Amuc_1499
Alternate gene names: NA
Gene position: 1789023-1789754 (Clockwise)
Preceding gene: 187735987
Following gene: 187735991
Centisome position: 67.15
GC content: 54.51
Gene sequence:
>732_bases ATGCTGCGCAGGTATTCTTTACTTTCCACTTTTTTTGCGGGAATGGCCGCCGTGTTTTTTTCCTTTGCTGCCTCCTTGGC CCAGGAGGCTTCTCCGGATGCCGGGCAGCTGCTGAAAAGGGTGCGCCAGGGGGCAACTCTTCAGGAAAACAAGGACATTA AGGGGCAAATACGCAAACGCAGCGTCAAAATTCCCTTTTCCATGAGTCTGCGCGGCAATCTGATAGCCTTCCAGTACCAG CTCAATAATGTCTGGAACAGGTTCGACCTGAAATTCAAGGACCGCGGCCAGGAGATCCTTTCCTGGAAGGACGGGAAAGC CGGTGTTTTGCCGGTTGCCCAGTATGCGGTGCCCATTGCGGGGACGGACGTAACGTACGAAGATCTTTCCATGCGCTACC TGTACTGGCCCCAGGCAAAAATTGTCCGGGATGATGCGGCGAGCACCGTCAAGGGGCGGGATTGCTGGATTGTCCAGATA CCGAATCCTAATTCCGGGGTGGGGCAATATGCCTGGGTGCGCGTCTGGATTGATAAGGAGAACGGCGCCATGTGGCAGGT GGATGGCATTGACCGCCGCGGGGAGCTGGCTAAAAGGTTCATGATTGATTCCGTGATGAAATTGAAGGACGGATCCTGGT TTTTCAAACGGATGAAGGTGGAGGTCCGGGATCCTTCCAATCCGCGCAGAACGGTCTCCGTCAGCTACATAGATATGGAC AGCCCAGAATAG
Upstream 100 bases:
>100_bases ATTACCTAGTCGAGCAAAATTTGGTGTAAAATGTCACGGACGCCGCCCGGTGACTGAGAAAAGGTTTTTTTCCGCCTTTC CGGAGTGATATGAGCAATTC
Downstream 100 bases:
>100_bases CCTTCCGGTTCCCGTTCCATTCCCCGCGGAGCTTTCGGATTATTCTTTCCGGGGCATGGGGGCGGATTCCTTTTCATGCC GCACAGATGGATGATTTAGG
Product: sigma E regulatory protein, MucB/RseB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MLRRYSLLSTFFAGMAAVFFSFAASLAQEASPDAGQLLKRVRQGATLQENKDIKGQIRKRSVKIPFSMSLRGNLIAFQYQ LNNVWNRFDLKFKDRGQEILSWKDGKAGVLPVAQYAVPIAGTDVTYEDLSMRYLYWPQAKIVRDDAASTVKGRDCWIVQI PNPNSGVGQYAWVRVWIDKENGAMWQVDGIDRRGELAKRFMIDSVMKLKDGSWFFKRMKVEVRDPSNPRRTVSVSYIDMD SPE
Sequences:
>Translated_243_residues MLRRYSLLSTFFAGMAAVFFSFAASLAQEASPDAGQLLKRVRQGATLQENKDIKGQIRKRSVKIPFSMSLRGNLIAFQYQ LNNVWNRFDLKFKDRGQEILSWKDGKAGVLPVAQYAVPIAGTDVTYEDLSMRYLYWPQAKIVRDDAASTVKGRDCWIVQI PNPNSGVGQYAWVRVWIDKENGAMWQVDGIDRRGELAKRFMIDSVMKLKDGSWFFKRMKVEVRDPSNPRRTVSVSYIDMD SPE >Mature_243_residues MLRRYSLLSTFFAGMAAVFFSFAASLAQEASPDAGQLLKRVRQGATLQENKDIKGQIRKRSVKIPFSMSLRGNLIAFQYQ LNNVWNRFDLKFKDRGQEILSWKDGKAGVLPVAQYAVPIAGTDVTYEDLSMRYLYWPQAKIVRDDAASTVKGRDCWIVQI PNPNSGVGQYAWVRVWIDKENGAMWQVDGIDRRGELAKRFMIDSVMKLKDGSWFFKRMKVEVRDPSNPRRTVSVSYIDMD SPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27820; Mature: 27820
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRRYSLLSTFFAGMAAVFFSFAASLAQEASPDAGQLLKRVRQGATLQENKDIKGQIRKR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHEEECC SVKIPFSMSLRGNLIAFQYQLNNVWNRFDLKFKDRGQEILSWKDGKAGVLPVAQYAVPIA EEECCEEECCCCCEEEEEEEECCCCCCEEEEECCCCCCEEEECCCCCCCEEHHHEEEEEC GTDVTYEDLSMRYLYWPQAKIVRDDAASTVKGRDCWIVQIPNPNSGVGQYAWVRVWIDKE CCCCCHHHCEEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECC NGAMWQVDGIDRRGELAKRFMIDSVMKLKDGSWFFKRMKVEVRDPSNPRRTVSVSYIDMD CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEEECC SPE CCC >Mature Secondary Structure MLRRYSLLSTFFAGMAAVFFSFAASLAQEASPDAGQLLKRVRQGATLQENKDIKGQIRKR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHEEECC SVKIPFSMSLRGNLIAFQYQLNNVWNRFDLKFKDRGQEILSWKDGKAGVLPVAQYAVPIA EEECCEEECCCCCEEEEEEEECCCCCCEEEEECCCCCCEEEECCCCCCCEEHHHEEEEEC GTDVTYEDLSMRYLYWPQAKIVRDDAASTVKGRDCWIVQIPNPNSGVGQYAWVRVWIDKE CCCCCHHHCEEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECC NGAMWQVDGIDRRGELAKRFMIDSVMKLKDGSWFFKRMKVEVRDPSNPRRTVSVSYIDMD CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEEECC SPE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA