Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735987
Identifier: 187735987
GI number: 187735987
Start: 1786041
End: 1786835
Strand: Direct
Name: 187735987
Synonym: Amuc_1496
Alternate gene names: NA
Gene position: 1786041-1786835 (Clockwise)
Preceding gene: 187735982
Following gene: 187735990
Centisome position: 67.04
GC content: 54.09
Gene sequence:
>795_bases ATGGGGAGGAATCCCTTTTGGGCGGCTTTGGATGCCGTGCTGGTGGTAAGGACGGAAAAAGATTCGTCCGGGCATCCGGA ATGGTCCTGGAAGGCGTATGTCCCTCATGGCGTTCCGGTTCATGAATTGCCTCCGGTGCCCGTTCCTCTTCCGGAAGGGG ATTGGGATAAGGAGCGGTTTCGTAAGGAAAGACGGAAAGCTGCCCGGGTGTTGGGTCACCAGGCCGCTTTAACGCTGGCT TCTTCCCTCCATTTCTCCCGTTTCATGATTGTGGAGGAAGAGTGCCGTTTCAGGCTGCCGGTAATAGGTTCCACGGCGCG GATGCTTGGGCAGCTGCTGAAAGGCTGCCGGGAAAGAACTGCTCTGTTTTTAAGTGAGCCGCGTTTGTCTCCCCATACGG CCTGCTCCGTGGCGAAAGGAGAAAAATCCATCCTGCTGCGCGTGACGGATATGGCGGCATCAGCTGCGTATGTGATGGAC CTTTCCTTATGTGAACGCATTCTTTTATCTCTTCCGTCAGATCAGCGGGTCTGGCCATGGCTGAGGTATTATGGTTCTCT GGAGGAATGGTTTGCCCGGTATCTGGGACGTTATGGTGATTTATATGCTCTTTCCCCTGCGTTCGTTTCCTGCGGAGAGG GCGCTCCCATGCCCTCCCTCTGCAAATCCCTGGGCCATTTCAATAATGCACGCACCAAATATACGGATCTGTCTTATCTG GTGAATCCGGCGGTCAATTCATGGCGCTGGCTGAAAAACGTGAACATTTTTTCCGGCAGAAAAAGGCTTGGGTGA
Upstream 100 bases:
>100_bases CACGTTAAAAACATGTTGAGAATGGAGGTCCGGCTTGAAAAGGGAGTTCGGAGGGAGCTAGGTGAAGGCCATGAATATGC TTTGGTCAAGGTTATTGCGG
Downstream 100 bases:
>100_bases GAACCCCGGGATGCGTTTTGCTCCGGCTTCGCCGGATTACCGTTTGCGGGGGATGAACGCCTGCATGGCTGGGGCTGCCG CCTTACGGCAGAGCTTGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MGRNPFWAALDAVLVVRTEKDSSGHPEWSWKAYVPHGVPVHELPPVPVPLPEGDWDKERFRKERRKAARVLGHQAALTLA SSLHFSRFMIVEEECRFRLPVIGSTARMLGQLLKGCRERTALFLSEPRLSPHTACSVAKGEKSILLRVTDMAASAAYVMD LSLCERILLSLPSDQRVWPWLRYYGSLEEWFARYLGRYGDLYALSPAFVSCGEGAPMPSLCKSLGHFNNARTKYTDLSYL VNPAVNSWRWLKNVNIFSGRKRLG
Sequences:
>Translated_264_residues MGRNPFWAALDAVLVVRTEKDSSGHPEWSWKAYVPHGVPVHELPPVPVPLPEGDWDKERFRKERRKAARVLGHQAALTLA SSLHFSRFMIVEEECRFRLPVIGSTARMLGQLLKGCRERTALFLSEPRLSPHTACSVAKGEKSILLRVTDMAASAAYVMD LSLCERILLSLPSDQRVWPWLRYYGSLEEWFARYLGRYGDLYALSPAFVSCGEGAPMPSLCKSLGHFNNARTKYTDLSYL VNPAVNSWRWLKNVNIFSGRKRLG >Mature_263_residues GRNPFWAALDAVLVVRTEKDSSGHPEWSWKAYVPHGVPVHELPPVPVPLPEGDWDKERFRKERRKAARVLGHQAALTLAS SLHFSRFMIVEEECRFRLPVIGSTARMLGQLLKGCRERTALFLSEPRLSPHTACSVAKGEKSILLRVTDMAASAAYVMDL SLCERILLSLPSDQRVWPWLRYYGSLEEWFARYLGRYGDLYALSPAFVSCGEGAPMPSLCKSLGHFNNARTKYTDLSYLV NPAVNSWRWLKNVNIFSGRKRLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29920; Mature: 29789
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRNPFWAALDAVLVVRTEKDSSGHPEWSWKAYVPHGVPVHELPPVPVPLPEGDWDKERF CCCCHHHHHHHEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH RKERRKAARVLGHQAALTLASSLHFSRFMIVEEECRFRLPVIGSTARMLGQLLKGCRERT HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHH ALFLSEPRLSPHTACSVAKGEKSILLRVTDMAASAAYVMDLSLCERILLSLPSDQRVWPW HEEEECCCCCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LRYYGSLEEWFARYLGRYGDLYALSPAFVSCGEGAPMPSLCKSLGHFNNARTKYTDLSYL HHHHCCHHHHHHHHHHCCCCEEEECHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH VNPAVNSWRWLKNVNIFSGRKRLG HHHHHHHHHHHHCCCCCCCHHCCC >Mature Secondary Structure GRNPFWAALDAVLVVRTEKDSSGHPEWSWKAYVPHGVPVHELPPVPVPLPEGDWDKERF CCCHHHHHHHEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH RKERRKAARVLGHQAALTLASSLHFSRFMIVEEECRFRLPVIGSTARMLGQLLKGCRERT HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHH ALFLSEPRLSPHTACSVAKGEKSILLRVTDMAASAAYVMDLSLCERILLSLPSDQRVWPW HEEEECCCCCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LRYYGSLEEWFARYLGRYGDLYALSPAFVSCGEGAPMPSLCKSLGHFNNARTKYTDLSYL HHHHCCHHHHHHHHHHCCCCEEEECHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH VNPAVNSWRWLKNVNIFSGRKRLG HHHHHHHHHHHHCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA