Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is aroD [H]
Identifier: 187735986
GI number: 187735986
Start: 1784973
End: 1785680
Strand: Reverse
Name: aroD [H]
Synonym: Amuc_1495
Alternate gene names: 187735986
Gene position: 1785680-1784973 (Counterclockwise)
Preceding gene: 187735988
Following gene: 187735985
Centisome position: 67.03
GC content: 58.33
Gene sequence:
>708_bases ATGCAGCAGATTGTACGTGAACATCAGGCCTATCCGCCGAAAATCGTTGCGTCCGTTACCTCGTGGGAGCTATGGAAAAC GCTGAAAGGAAAAGATTTAACAGACCAGTGCGATCTAGTAGAACTGCGCGTGGATGCCCTTCCCCCGGAACTCACGACTG AACAGGTTATGGAGTTCCGGCCGGAGATGCCCCTGCTGGTCACCGTGCGCTGCCATGAGGAAGGAGGGCTGCGCCGCATC CCGGAAGAAGAGCGCTTTGCCCTGCTCCGGGCCTATATGCCGTATGCCGCCGCCATGGACATTGAAATCAAGGCCATGCG CCACGCCAGGGAACTGGTTATGGAAGCGCGGGAGCGGGACGTCATCATCATCGGCTCCACCCATGATTTCCAAATCACTC CGGGTGTGGATTACCTGCGCGAACAGGAAAAAAAGGCGCGCTCCTACAAGGCGGATATCGTCAAATTTGCATTCACGCCC TGCCTGGCCTCGGACATCCAGACAGGAGTACAGCTTTTCACCAAGCCCAAGGGGCCGATCGCCGTCATGGGAATGGGGCC CATGGGACCCGTCTCCCGCCTGCTTTACTCTCAACTGGGTTCCTGCCTGGTATATGGCTACCTGGGAGAAGAGGAAACGG CCCCCGGGCAATGGCACGTCTCACTCATTAAGGAAACCCTCCGCCGCCTCGGCCCCATCCTCCGCTGA
Upstream 100 bases:
>100_bases AGGGGAAAAGGCAGGCGAACTGACATACTCGGCCCCAAAATGAAGTGGAACTCATCAATAGAAGATTGACCTTCCTTCCT TTGCTGGGATAGTAGGATGT
Downstream 100 bases:
>100_bases TTACGGAGCCTTCCCTCACATGAATATCATTACTTCCGCCTTTCTGGCGGCACGCCCCAAGACGCTCACCGCCTCCCTGA TTCCGGTATGGGCAGGCTGC
Product: 3-dehydroquinate dehydratase
Products: NA
Alternate protein names: 3-dehydroquinase; Type I DHQase [H]
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MQQIVREHQAYPPKIVASVTSWELWKTLKGKDLTDQCDLVELRVDALPPELTTEQVMEFRPEMPLLVTVRCHEEGGLRRI PEEERFALLRAYMPYAAAMDIEIKAMRHARELVMEARERDVIIIGSTHDFQITPGVDYLREQEKKARSYKADIVKFAFTP CLASDIQTGVQLFTKPKGPIAVMGMGPMGPVSRLLYSQLGSCLVYGYLGEEETAPGQWHVSLIKETLRRLGPILR
Sequences:
>Translated_235_residues MQQIVREHQAYPPKIVASVTSWELWKTLKGKDLTDQCDLVELRVDALPPELTTEQVMEFRPEMPLLVTVRCHEEGGLRRI PEEERFALLRAYMPYAAAMDIEIKAMRHARELVMEARERDVIIIGSTHDFQITPGVDYLREQEKKARSYKADIVKFAFTP CLASDIQTGVQLFTKPKGPIAVMGMGPMGPVSRLLYSQLGSCLVYGYLGEEETAPGQWHVSLIKETLRRLGPILR >Mature_235_residues MQQIVREHQAYPPKIVASVTSWELWKTLKGKDLTDQCDLVELRVDALPPELTTEQVMEFRPEMPLLVTVRCHEEGGLRRI PEEERFALLRAYMPYAAAMDIEIKAMRHARELVMEARERDVIIIGSTHDFQITPGVDYLREQEKKARSYKADIVKFAFTP CLASDIQTGVQLFTKPKGPIAVMGMGPMGPVSRLLYSQLGSCLVYGYLGEEETAPGQWHVSLIKETLRRLGPILR
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; third step. [C]
COG id: COG0710
COG function: function code E; 3-dehydroquinate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type-I 3-dehydroquinase family [H]
Homologues:
Organism=Escherichia coli, GI1787984, Length=236, Percent_Identity=30.9322033898305, Blast_Score=86, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018508 - InterPro: IPR013785 - InterPro: IPR001381 [H]
Pfam domain/function: PF01487 DHquinase_I [H]
EC number: =4.2.1.10 [H]
Molecular weight: Translated: 26741; Mature: 26741
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQIVREHQAYPPKIVASVTSWELWKTLKGKDLTDQCDLVELRVDALPPELTTEQVMEFR CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHC PEMPLLVTVRCHEEGGLRRIPEEERFALLRAYMPYAAAMDIEIKAMRHARELVMEARERD CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCC VIIIGSTHDFQITPGVDYLREQEKKARSYKADIVKFAFTPCLASDIQTGVQLFTKPKGPI EEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE AVMGMGPMGPVSRLLYSQLGSCLVYGYLGEEETAPGQWHVSLIKETLRRLGPILR EEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MQQIVREHQAYPPKIVASVTSWELWKTLKGKDLTDQCDLVELRVDALPPELTTEQVMEFR CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHC PEMPLLVTVRCHEEGGLRRIPEEERFALLRAYMPYAAAMDIEIKAMRHARELVMEARERD CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCC VIIIGSTHDFQITPGVDYLREQEKKARSYKADIVKFAFTPCLASDIQTGVQLFTKPKGPI EEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE AVMGMGPMGPVSRLLYSQLGSCLVYGYLGEEETAPGQWHVSLIKETLRRLGPILR EEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA