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The map label for this gene is rpsF

Identifier: 187735967

GI number: 187735967

Start: 1767340

End: 1767624

Strand: Reverse

Name: rpsF

Synonym: Amuc_1476

Alternate gene names: 187735967

Gene position: 1767624-1767340 (Counterclockwise)

Preceding gene: 187735968

Following gene: 187735961

Centisome position: 66.35

GC content: 56.14

Gene sequence:

>285_bases
ATGAGAAATTACGAAGCTCTTATCGTATTCAACATGAAGGGTACGGAAACTCCCGTCGAGGAGTTGATCAGCACCGTAGC
CGCCGCGATGAAGGAAGAAGGCGCCGACATCACCGCCACGGAAAACGCCGGCCGCCGCGAATTCGCCTACGAATCCAACC
ACCTTTCCGCCGGGCAGTATGTGACCTACACGTTCTCTGCGGAACCTTCCGCCATCAGGCCCATCCGCGAACGCCTTCGC
CTGAATCCCCAGATTCACCTTCAGTATTACAAGGTGCTCGGCTAA

Upstream 100 bases:

>100_bases
AGGTAAAAAATAGGCTTGCTTTCTGAAGGCAATCATTGCACCTTACTTGCCCGCAAGGTGCGCACCGTTCGCACGACACA
TTTCTAATTATCACAAGACC

Downstream 100 bases:

>100_bases
AATCCGGCCCATGCGGACGAAATATCCGCTCCTTGCTTTCTTATCAAAAAGAACCGTCTCCGCGAAGGGGCGGTTCTTTT
CTTATGGATTACCATCCCTT

Product: ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQYVTYTFSAEPSAIRPIRERLR
LNPQIHLQYYKVLG

Sequences:

>Translated_94_residues
MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQYVTYTFSAEPSAIRPIRERLR
LNPQIHLQYYKVLG
>Mature_94_residues
MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQYVTYTFSAEPSAIRPIRERLR
LNPQIHLQYYKVLG

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_AKKM8 (B2UL25)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001878079.1
- ProteinModelPortal:   B2UL25
- SMR:   B2UL25
- GeneID:   6275621
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_1476
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60
- TIGRFAMs:   TIGR00166

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 10640; Mature: 10640

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQY
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCE
VTYTFSAEPSAIRPIRERLRLNPQIHLQYYKVLG
EEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECC
>Mature Secondary Structure
MRNYEALIVFNMKGTETPVEELISTVAAAMKEEGADITATENAGRREFAYESNHLSAGQY
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCE
VTYTFSAEPSAIRPIRERLRLNPQIHLQYYKVLG
EEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA