Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735914
Identifier: 187735914
GI number: 187735914
Start: 1707539
End: 1708750
Strand: Reverse
Name: 187735914
Synonym: Amuc_1423
Alternate gene names: NA
Gene position: 1708750-1707539 (Counterclockwise)
Preceding gene: 187735915
Following gene: 187735912
Centisome position: 64.14
GC content: 56.11
Gene sequence:
>1212_bases ATGTTCATGCCTCCCGTCTTACCCCTGATGAAAAAGCCCGCACGCCTCTGCCTGGCGGCGGGAACTCTGTTCACCCTTTT CCTTACCCCCCTTGCACAGGGGCGCACCTGGACCAACCTCCAAGGGAAAAAACTGGAAGCAGAATTCATCAGGCTGGACG GCCAGAAAGCCGTGCTGAAACGTTCCGGCGGCCAAACCGTCTCCATTCCCCTCACCCAGCTCTCCCGGGAAGACAGGGAT TTCATCGCGGAACAGGAAAAAGGAGGGGCACTCCCCTCCAATACGGCGGACAATTACCACCTGCCGTGGCCCAGGAGCGT CAAATGCCCGGACAATTTCAAGGTGGAAACCATCAAGGAGGAACCGGGAGAATATATTTATGAAACACCCCATTTCCGCT TCATCTGCGACGCCAAGCTGGGCACCGGCATGATCAAGCGCCTGGGCCTCCTCTTTGAGGCCACCCACTTGGCCAACAAA ACCCTTCCTATAGGAAACTCCCCTGCCCATGACGATTCCGCCAAATTCCCCGCCTACCTGTATGAAAAATTCAGCACCTA TCTGGAAAACGGCGGACGCGAAGGCACGGCGGGCATCTTCCTGGGGACAACGCGGCCAGGGGACCGCGGAAGAATTCTGG TTCCGTTCGATTCCCTGGGAGTCAAAACCATGGGAAGCACATACGTCATTGACCGTGACAAGGACGCTTCCACCCTCATC CATGAACTGACGCACCAGCTCATGTCTTCGCAGGCCAAGCAGGCCAGCTGGTTTTGTGAAGGCTCCGCGGAATACATGGG CATGACGCCCTATGCCGGAGGCCGCTTCAACTTTGGAGCCAACCGATCCCACATTGTCTCCCGCGTGACGGAATACGGCA AAAAAAATACGGGGGGACGGGCCCTTGGGGATGACTTTGAGGCGCCCGGCCTGGAAGCTTACATGAACATGCCCTATTCC CAGTTCACGGGAGAAAACGCCAACCTGAACTACGGCCTGGCCGCCCTGATGGCCTACTATTTTTACCACATGGACGGCAA GGGCGATGCCCGGCGCATCAAGAATTACATGAAAGCCATTCAATCCGGAACCAGTGAAAAGGAAGCTCAGAAACTCCTCC TTGACGGACGGAGCTATGAAGAACTGGCCAAAGAAATTGAACAGAAATGGCGCAAGGCCGGCGTTAAAATCCGCTTCCGT TCCTCTTCCTGA
Upstream 100 bases:
>100_bases GCGTTCCGCTGACCACCACCCTGGCGGCGGCAGGATGCCTGATGCTGTTCTGCGGGCTGCTGCTCCTGATGCTGCCGCGT CCCAAACATTAAACGCAATT
Downstream 100 bases:
>100_bases ACTGTGCCGCGCGTTCCGTGGAAACAGTCCCCCGACGGAAAACGAAGGGCGGTTTGTGCCCTGAAAAACCGTTGACACGG GAGGGAAAGGCGGCACACTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MFMPPVLPLMKKPARLCLAAGTLFTLFLTPLAQGRTWTNLQGKKLEAEFIRLDGQKAVLKRSGGQTVSIPLTQLSREDRD FIAEQEKGGALPSNTADNYHLPWPRSVKCPDNFKVETIKEEPGEYIYETPHFRFICDAKLGTGMIKRLGLLFEATHLANK TLPIGNSPAHDDSAKFPAYLYEKFSTYLENGGREGTAGIFLGTTRPGDRGRILVPFDSLGVKTMGSTYVIDRDKDASTLI HELTHQLMSSQAKQASWFCEGSAEYMGMTPYAGGRFNFGANRSHIVSRVTEYGKKNTGGRALGDDFEAPGLEAYMNMPYS QFTGENANLNYGLAALMAYYFYHMDGKGDARRIKNYMKAIQSGTSEKEAQKLLLDGRSYEELAKEIEQKWRKAGVKIRFR SSS
Sequences:
>Translated_403_residues MFMPPVLPLMKKPARLCLAAGTLFTLFLTPLAQGRTWTNLQGKKLEAEFIRLDGQKAVLKRSGGQTVSIPLTQLSREDRD FIAEQEKGGALPSNTADNYHLPWPRSVKCPDNFKVETIKEEPGEYIYETPHFRFICDAKLGTGMIKRLGLLFEATHLANK TLPIGNSPAHDDSAKFPAYLYEKFSTYLENGGREGTAGIFLGTTRPGDRGRILVPFDSLGVKTMGSTYVIDRDKDASTLI HELTHQLMSSQAKQASWFCEGSAEYMGMTPYAGGRFNFGANRSHIVSRVTEYGKKNTGGRALGDDFEAPGLEAYMNMPYS QFTGENANLNYGLAALMAYYFYHMDGKGDARRIKNYMKAIQSGTSEKEAQKLLLDGRSYEELAKEIEQKWRKAGVKIRFR SSS >Mature_403_residues MFMPPVLPLMKKPARLCLAAGTLFTLFLTPLAQGRTWTNLQGKKLEAEFIRLDGQKAVLKRSGGQTVSIPLTQLSREDRD FIAEQEKGGALPSNTADNYHLPWPRSVKCPDNFKVETIKEEPGEYIYETPHFRFICDAKLGTGMIKRLGLLFEATHLANK TLPIGNSPAHDDSAKFPAYLYEKFSTYLENGGREGTAGIFLGTTRPGDRGRILVPFDSLGVKTMGSTYVIDRDKDASTLI HELTHQLMSSQAKQASWFCEGSAEYMGMTPYAGGRFNFGANRSHIVSRVTEYGKKNTGGRALGDDFEAPGLEAYMNMPYS QFTGENANLNYGLAALMAYYFYHMDGKGDARRIKNYMKAIQSGTSEKEAQKLLLDGRSYEELAKEIEQKWRKAGVKIRFR SSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44990; Mature: 44990
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFMPPVLPLMKKPARLCLAAGTLFTLFLTPLAQGRTWTNLQGKKLEAEFIRLDGQKAVLK CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEHEEECCHHHHHH RSGGQTVSIPLTQLSREDRDFIAEQEKGGALPSNTADNYHLPWPRSVKCPDNFKVETIKE CCCCCEEEEEHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC EPGEYIYETPHFRFICDAKLGTGMIKRLGLLFEATHLANKTLPIGNSPAHDDSAKFPAYL CCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH YEKFSTYLENGGREGTAGIFLGTTRPGDRGRILVPFDSLGVKTMGSTYVIDRDKDASTLI HHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEECCCEEEEECCCCHHHHH HELTHQLMSSQAKQASWFCEGSAEYMGMTPYAGGRFNFGANRSHIVSRVTEYGKKNTGGR HHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC ALGDDFEAPGLEAYMNMPYSQFTGENANLNYGLAALMAYYFYHMDGKGDARRIKNYMKAI CCCCCCCCCCHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH QSGTSEKEAQKLLLDGRSYEELAKEIEQKWRKAGVKIRFRSSS HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCC >Mature Secondary Structure MFMPPVLPLMKKPARLCLAAGTLFTLFLTPLAQGRTWTNLQGKKLEAEFIRLDGQKAVLK CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEHEEECCHHHHHH RSGGQTVSIPLTQLSREDRDFIAEQEKGGALPSNTADNYHLPWPRSVKCPDNFKVETIKE CCCCCEEEEEHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC EPGEYIYETPHFRFICDAKLGTGMIKRLGLLFEATHLANKTLPIGNSPAHDDSAKFPAYL CCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH YEKFSTYLENGGREGTAGIFLGTTRPGDRGRILVPFDSLGVKTMGSTYVIDRDKDASTLI HHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEECCCEEEEECCCCHHHHH HELTHQLMSSQAKQASWFCEGSAEYMGMTPYAGGRFNFGANRSHIVSRVTEYGKKNTGGR HHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC ALGDDFEAPGLEAYMNMPYSQFTGENANLNYGLAALMAYYFYHMDGKGDARRIKNYMKAI CCCCCCCCCCHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH QSGTSEKEAQKLLLDGRSYEELAKEIEQKWRKAGVKIRFRSSS HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA