Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is groS1 [H]
Identifier: 187735899
GI number: 187735899
Start: 1682982
End: 1683272
Strand: Direct
Name: groS1 [H]
Synonym: Amuc_1407
Alternate gene names: 187735899
Gene position: 1682982-1683272 (Clockwise)
Preceding gene: 187735898
Following gene: 187735900
Centisome position: 63.17
GC content: 55.33
Gene sequence:
>291_bases ATGGCAAACATCAAACCCCTAGGACAACGTGTGCTGGTCAAGCGCATTGAAGCTGAAACCAAGACGGCCGGCGGCCTGTT CCTGCCGGACACCGCCAAGGAAAAACCCCAGGAAGCCGAAGTGATCTCCGTAGGCACCGGCGGCCGCGATGAAAAAGGCG CCCTGATTGAATTTACCGTGAAGCCCGGAGACCGCGTGCTTATTTCCAAGTACGGCGGCACGGAAATCAAACTGGACGGG GAAGACTACCTTATCCTGTCTGAAAACGATATTCTGGCCATCATCGGCTAA
Upstream 100 bases:
>100_bases AATAAGCAACCCCCTTCCCGCCGGAGGGGGAAGCAATTCCCCCTCCGGCGGAACATTACATCCCGTATTACTCATCTACA ACAACATCAAAAAACATACT
Downstream 100 bases:
>100_bases ATGGCACCACACACACATTCAACATCATTTTAAATATTTAACATTATGGCTAAACAAATCCAATTTGACGAAACCGCCCG CCAGGCTCTGCTCCGCGGCG
Product: chaperonin Cpn10
Products: NA
Alternate protein names: GroES protein 1; Protein Cpn10 1 [H]
Number of amino acids: Translated: 96; Mature: 95
Protein sequence:
>96_residues MANIKPLGQRVLVKRIEAETKTAGGLFLPDTAKEKPQEAEVISVGTGGRDEKGALIEFTVKPGDRVLISKYGGTEIKLDG EDYLILSENDILAIIG
Sequences:
>Translated_96_residues MANIKPLGQRVLVKRIEAETKTAGGLFLPDTAKEKPQEAEVISVGTGGRDEKGALIEFTVKPGDRVLISKYGGTEIKLDG EDYLILSENDILAIIG >Mature_95_residues ANIKPLGQRVLVKRIEAETKTAGGLFLPDTAKEKPQEAEVISVGTGGRDEKGALIEFTVKPGDRVLISKYGGTEIKLDGE DYLILSENDILAIIG
Specific function: Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter [H]
COG id: COG0234
COG function: function code O; Co-chaperonin GroES (HSP10)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GroES chaperonin family [H]
Homologues:
Organism=Homo sapiens, GI4504523, Length=87, Percent_Identity=44.8275862068966, Blast_Score=67, Evalue=2e-12, Organism=Homo sapiens, GI169210012, Length=87, Percent_Identity=42.5287356321839, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790585, Length=94, Percent_Identity=47.8723404255319, Blast_Score=77, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17555568, Length=95, Percent_Identity=49.4736842105263, Blast_Score=99, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6324594, Length=95, Percent_Identity=48.4210526315789, Blast_Score=79, Evalue=9e-17, Organism=Drosophila melanogaster, GI21358317, Length=90, Percent_Identity=43.3333333333333, Blast_Score=76, Evalue=5e-15, Organism=Drosophila melanogaster, GI21356029, Length=93, Percent_Identity=44.0860215053763, Blast_Score=70, Evalue=3e-13,
Paralogues:
None
Copy number: 980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 1274 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020818 - InterPro: IPR018369 - InterPro: IPR011032 [H]
Pfam domain/function: PF00166 Cpn10 [H]
EC number: NA
Molecular weight: Translated: 10311; Mature: 10180
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANIKPLGQRVLVKRIEAETKTAGGLFLPDTAKEKPQEAEVISVGTGGRDEKGALIEFTV CCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEE KPGDRVLISKYGGTEIKLDGEDYLILSENDILAIIG CCCCEEEEEECCCCEEEECCCCEEEECCCCEEEEEC >Mature Secondary Structure ANIKPLGQRVLVKRIEAETKTAGGLFLPDTAKEKPQEAEVISVGTGGRDEKGALIEFTV CCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEE KPGDRVLISKYGGTEIKLDGEDYLILSENDILAIIG CCCCEEEEEECCCCEEEECCCCEEEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8808920; 12597275 [H]