Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735844
Identifier: 187735844
GI number: 187735844
Start: 1623897
End: 1625270
Strand: Direct
Name: 187735844
Synonym: Amuc_1351
Alternate gene names: NA
Gene position: 1623897-1625270 (Clockwise)
Preceding gene: 187735843
Following gene: 187735845
Centisome position: 60.95
GC content: 51.09
Gene sequence:
>1374_bases ATGGATAATATCACCAAGGGTGACCCAATTAAGGCGGATTGGGCCAATGCTCTTACAAATGCCGTCAATGCGGCCGCGCA TGGCAAAACAGCCTTGCGCGGTGGCGGCGGGCAGAACGTTTTCATTTCCCCTTATCAGCGCGGTTCCCGCCCCCTGGCCT TTGATTTGGTGGAAATCACGGATGATGAGGAAGGTAGCCTTTCCGGCAAGATCTCCGGGGGTGTGCTGTTGTCCGCATAC AAAGAGGAACAGGAAGAAAAAATATCGCTGAAAACGGAATGCATGGAAATCAGCGAATATGAAGCAACCTTCCAATCAGG CGATAAGGTGTGGGTTCATGTGACCTATGATCCGGACACATGGGAGGCTTATGTTGCAATCCTGGAAAAAGGGAAAGAAC CGCCGGGGGCAGAAGAGGGTGAGGCCTACATTATTGTTGGCGAGTTTGAGGAACGCGACCAATCCATTATCTACAGGCAC AAAGGAATTACCTGTATCAACTGGGATGCAATCAAATGGGAATTTGAGAAATTCAAGCTCAAGACGGATCCTTTGTGCGC GCTGGAACTCAAGGAAGAAAAGAACGAAAAGGAAGAAGAGACCGAAAAGGAACTGACTCTGAATATTGAATCTTCCAGTG AAGAAGAAGAAGATTTGGGTGCCGACAGCAATTTGAAGGTATGGCTGGTGCAGAAAAAGGGGAAAGGGGAGGGCGGGGCA GAAGATGGGCCGGTCAGGCTTGGCGTGAGAATCAAAGATTCACGGAGTTTTCAGCAGGTGCAGCCGGGAGACGGCCTTGA ATGGAAAACGGAAAAAGGGGCGGATGGCCATAACATCCAGACGGAAATCCTGCAGGTCAGGATTGATTCCACGGTTTCTT CTTCAACGGGGCAAGAGGGAAGAATCCCCGTTGACCTGAGTGTGTCGCAGGAGGGATTGAAAGGCGAGGTGGATTTGACA ATTGATGATACGGAGCATGATTTATGGGGAGGGTGGAAAATCAAGCTGTCCAGGGCCACCAGGGGAGTATTGTCTCTTGC GGTCACTCCTGGAGGCGACGCGGAAGAATTGAGTTTTCGCGCCCCTTTGCGGAAAAATGGGAAGTATGTTGTGCTTGATT ATGTCAAGGATCCTCACACCCTGCCGGACGGCACGACTATTGCCTTGTATGACCGGAATGGACAGCTTGATCTTGAGGTC GATACGTCCAACACGACCGGCGGCGGGGACGGAGCCCTGATCAGCGATTCCTGGACAGCGTTGGCCTGCGACACTGACCA CGCCTTACGCCTGCACCGGGACGAAAACGGGAAAATCTATATCCAGCAGGGGGAATGGATTGTGACTTCCAAAATTTATT CACCAATAAATTAA
Upstream 100 bases:
>100_bases ACCCGGTATTCCGTCCACAAAGTAGGCAATCGGGAATACGAAATTACGGAAGAATACACCCAATCCAACCCCGGAGGCTG GTCTGCGGACCTGTACAAAA
Downstream 100 bases:
>100_bases TAAAAATGAATTACGCAATATTCTGTTATAGAGAAGATTATAAATGCCTTGAATTGTGCGTTGGTCAAATCCGCCGGGTT GATCCTGATTGTACGATTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MDNITKGDPIKADWANALTNAVNAAAHGKTALRGGGGQNVFISPYQRGSRPLAFDLVEITDDEEGSLSGKISGGVLLSAY KEEQEEKISLKTECMEISEYEATFQSGDKVWVHVTYDPDTWEAYVAILEKGKEPPGAEEGEAYIIVGEFEERDQSIIYRH KGITCINWDAIKWEFEKFKLKTDPLCALELKEEKNEKEEETEKELTLNIESSSEEEEDLGADSNLKVWLVQKKGKGEGGA EDGPVRLGVRIKDSRSFQQVQPGDGLEWKTEKGADGHNIQTEILQVRIDSTVSSSTGQEGRIPVDLSVSQEGLKGEVDLT IDDTEHDLWGGWKIKLSRATRGVLSLAVTPGGDAEELSFRAPLRKNGKYVVLDYVKDPHTLPDGTTIALYDRNGQLDLEV DTSNTTGGGDGALISDSWTALACDTDHALRLHRDENGKIYIQQGEWIVTSKIYSPIN
Sequences:
>Translated_457_residues MDNITKGDPIKADWANALTNAVNAAAHGKTALRGGGGQNVFISPYQRGSRPLAFDLVEITDDEEGSLSGKISGGVLLSAY KEEQEEKISLKTECMEISEYEATFQSGDKVWVHVTYDPDTWEAYVAILEKGKEPPGAEEGEAYIIVGEFEERDQSIIYRH KGITCINWDAIKWEFEKFKLKTDPLCALELKEEKNEKEEETEKELTLNIESSSEEEEDLGADSNLKVWLVQKKGKGEGGA EDGPVRLGVRIKDSRSFQQVQPGDGLEWKTEKGADGHNIQTEILQVRIDSTVSSSTGQEGRIPVDLSVSQEGLKGEVDLT IDDTEHDLWGGWKIKLSRATRGVLSLAVTPGGDAEELSFRAPLRKNGKYVVLDYVKDPHTLPDGTTIALYDRNGQLDLEV DTSNTTGGGDGALISDSWTALACDTDHALRLHRDENGKIYIQQGEWIVTSKIYSPIN >Mature_457_residues MDNITKGDPIKADWANALTNAVNAAAHGKTALRGGGGQNVFISPYQRGSRPLAFDLVEITDDEEGSLSGKISGGVLLSAY KEEQEEKISLKTECMEISEYEATFQSGDKVWVHVTYDPDTWEAYVAILEKGKEPPGAEEGEAYIIVGEFEERDQSIIYRH KGITCINWDAIKWEFEKFKLKTDPLCALELKEEKNEKEEETEKELTLNIESSSEEEEDLGADSNLKVWLVQKKGKGEGGA EDGPVRLGVRIKDSRSFQQVQPGDGLEWKTEKGADGHNIQTEILQVRIDSTVSSSTGQEGRIPVDLSVSQEGLKGEVDLT IDDTEHDLWGGWKIKLSRATRGVLSLAVTPGGDAEELSFRAPLRKNGKYVVLDYVKDPHTLPDGTTIALYDRNGQLDLEV DTSNTTGGGDGALISDSWTALACDTDHALRLHRDENGKIYIQQGEWIVTSKIYSPIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50420; Mature: 50420
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNITKGDPIKADWANALTNAVNAAAHGKTALRGGGGQNVFISPYQRGSRPLAFDLVEIT CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCEEEEEEEEC DDEEGSLSGKISGGVLLSAYKEEQEEKISLKTECMEISEYEATFQSGDKVWVHVTYDPDT CCCCCCEEEEECCCEEEEEHHHHHHHHEEHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC WEAYVAILEKGKEPPGAEEGEAYIIVGEFEERDQSIIYRHKGITCINWDAIKWEFEKFKL HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEECCCEEEEEEEEEE KTDPLCALELKEEKNEKEEETEKELTLNIESSSEEEEDLGADSNLKVWLVQKKGKGEGGA CCCCEEEEEEHHHCCCHHHCCCEEEEEEECCCCCCHHHCCCCCCEEEEEEEECCCCCCCC EDGPVRLGVRIKDSRSFQQVQPGDGLEWKTEKGADGHNIQTEILQVRIDSTVSSSTGQEG CCCCEEEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC RIPVDLSVSQEGLKGEVDLTIDDTEHDLWGGWKIKLSRATRGVLSLAVTPGGDAEELSFR CEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHEEEE APLRKNGKYVVLDYVKDPHTLPDGTTIALYDRNGQLDLEVDTSNTTGGGDGALISDSWTA CCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCEEECCCEE LACDTDHALRLHRDENGKIYIQQGEWIVTSKIYSPIN EEECCCCEEEEEECCCCEEEEECCCEEEEEECCCCCC >Mature Secondary Structure MDNITKGDPIKADWANALTNAVNAAAHGKTALRGGGGQNVFISPYQRGSRPLAFDLVEIT CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCEEEEEEEEC DDEEGSLSGKISGGVLLSAYKEEQEEKISLKTECMEISEYEATFQSGDKVWVHVTYDPDT CCCCCCEEEEECCCEEEEEHHHHHHHHEEHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC WEAYVAILEKGKEPPGAEEGEAYIIVGEFEERDQSIIYRHKGITCINWDAIKWEFEKFKL HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEECCCEEEEEEEEEE KTDPLCALELKEEKNEKEEETEKELTLNIESSSEEEEDLGADSNLKVWLVQKKGKGEGGA CCCCEEEEEEHHHCCCHHHCCCEEEEEEECCCCCCHHHCCCCCCEEEEEEEECCCCCCCC EDGPVRLGVRIKDSRSFQQVQPGDGLEWKTEKGADGHNIQTEILQVRIDSTVSSSTGQEG CCCCEEEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC RIPVDLSVSQEGLKGEVDLTIDDTEHDLWGGWKIKLSRATRGVLSLAVTPGGDAEELSFR CEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHEEEE APLRKNGKYVVLDYVKDPHTLPDGTTIALYDRNGQLDLEVDTSNTTGGGDGALISDSWTA CCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCEEECCCEE LACDTDHALRLHRDENGKIYIQQGEWIVTSKIYSPIN EEECCCCEEEEEECCCCEEEEECCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA