Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
---|---|
Accession | NC_010655 |
Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735835
Identifier: 187735835
GI number: 187735835
Start: 1616999
End: 1617937
Strand: Direct
Name: 187735835
Synonym: Amuc_1342
Alternate gene names: NA
Gene position: 1616999-1617937 (Clockwise)
Preceding gene: 187735834
Following gene: 187735836
Centisome position: 60.7
GC content: 46.86
Gene sequence:
>939_bases ATGGCTATATCAACAATACCATTCCACCCGCTCGACGCCGAGAATAATCCTCGTTATAAAGTGAAGAAAAAGGACGCACC CAAGATCGTCTGGCATGAGACGGAAGAAACCGGGGCGCATGATTGGGAAGGATACATTCGTATTCCCTTCGATAAGGAAT GTGCCTTTACCATTCAGATGGACGACAACGGTTACTTGGAAATCGACAACCAGAAAGTGGTGGAACTCAACGGTAGCAAC TCATCCAAGAAAGCGGAGGGTAAGAAGGAGCTCAAGCAAGGTTACCATTATGTCAAGCTCCATCATGAAAATTTGAAGGT TCCGGATGCAATTGCTCCCTATCCCAATGCGGAAGAATTCGTTCCTCAAATGGATGGTGTTGACCTGGAACTTTGGGAAA TTGATGCTCCCACGAATCTCTGGAAGATGGAGGATGCCCAAAAACTGCTGAAATGTTACAATGTGGTGGATTATGTCACT ATGCCTGATCCTGGACAGGTTTGGGCTTATATTGGGGGGTGGCTCTACCAGGCTCACTTAAAGGAAATTAAGGACAATGT TCCGGAACAATCGCGCAATTATTATAACAGTTGTGCCTTGCGAATGAGTATTGCTCTAAGTTCCTTCGGAAAGGATTTGA AGGGTGAAGCAGGAGCGGAGCTCATAGGAGACAAGGCGAACGCTGATACAATAGGAGGTAAAACCCATGTCATCACCCGT GCACGGGATATGGCTGCTTATGTGCAAAAACTCTTGGGCGACCCTGATTATCCCGACGCCCAGGATAAAGGTTATTGCAG CCCGCAGCCGGGCGACATCATTGTGTTTGCAGGAAATGGCCATGTAGGAATGTGTCCGGGAGACAACATATTCATTGGCA GTTTTCTGACTGGCCCTATTTGGTTAATCAATCGGTCCACATTGAAAGACGCTGAATAA
Upstream 100 bases:
>100_bases ACGCGTTAAACGTGTTGATGGGGAGCGAGAAATTTTTCAAAGTTTTCATGAACTGAATATTCAGTTCATTCAACAATAAA CGATTAGAAAGCATAACATT
Downstream 100 bases:
>100_bases TTCATAAACTTCTCTTTCACGGGGCGAATGCTGTTAGAGCGTTCGCCCCGTTTTTTGAACATAATGGGGAAAAAATAATA TATACTTTTATGGATAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MAISTIPFHPLDAENNPRYKVKKKDAPKIVWHETEETGAHDWEGYIRIPFDKECAFTIQMDDNGYLEIDNQKVVELNGSN SSKKAEGKKELKQGYHYVKLHHENLKVPDAIAPYPNAEEFVPQMDGVDLELWEIDAPTNLWKMEDAQKLLKCYNVVDYVT MPDPGQVWAYIGGWLYQAHLKEIKDNVPEQSRNYYNSCALRMSIALSSFGKDLKGEAGAELIGDKANADTIGGKTHVITR ARDMAAYVQKLLGDPDYPDAQDKGYCSPQPGDIIVFAGNGHVGMCPGDNIFIGSFLTGPIWLINRSTLKDAE
Sequences:
>Translated_312_residues MAISTIPFHPLDAENNPRYKVKKKDAPKIVWHETEETGAHDWEGYIRIPFDKECAFTIQMDDNGYLEIDNQKVVELNGSN SSKKAEGKKELKQGYHYVKLHHENLKVPDAIAPYPNAEEFVPQMDGVDLELWEIDAPTNLWKMEDAQKLLKCYNVVDYVT MPDPGQVWAYIGGWLYQAHLKEIKDNVPEQSRNYYNSCALRMSIALSSFGKDLKGEAGAELIGDKANADTIGGKTHVITR ARDMAAYVQKLLGDPDYPDAQDKGYCSPQPGDIIVFAGNGHVGMCPGDNIFIGSFLTGPIWLINRSTLKDAE >Mature_311_residues AISTIPFHPLDAENNPRYKVKKKDAPKIVWHETEETGAHDWEGYIRIPFDKECAFTIQMDDNGYLEIDNQKVVELNGSNS SKKAEGKKELKQGYHYVKLHHENLKVPDAIAPYPNAEEFVPQMDGVDLELWEIDAPTNLWKMEDAQKLLKCYNVVDYVTM PDPGQVWAYIGGWLYQAHLKEIKDNVPEQSRNYYNSCALRMSIALSSFGKDLKGEAGAELIGDKANADTIGGKTHVITRA RDMAAYVQKLLGDPDYPDAQDKGYCSPQPGDIIVFAGNGHVGMCPGDNIFIGSFLTGPIWLINRSTLKDAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34982; Mature: 34851
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISTIPFHPLDAENNPRYKVKKKDAPKIVWHETEETGAHDWEGYIRIPFDKECAFTIQM CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEE DDNGYLEIDNQKVVELNGSNSSKKAEGKKELKQGYHYVKLHHENLKVPDAIAPYPNAEEF CCCCEEEECCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHH VPQMDGVDLELWEIDAPTNLWKMEDAQKLLKCYNVVDYVTMPDPGQVWAYIGGWLYQAHL HHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHH KEIKDNVPEQSRNYYNSCALRMSIALSSFGKDLKGEAGAELIGDKANADTIGGKTHVITR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEH ARDMAAYVQKLLGDPDYPDAQDKGYCSPQPGDIIVFAGNGHVGMCPGDNIFIGSFLTGPI HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCEEECCCCCCCE WLINRSTLKDAE EEEECCCCCCCC >Mature Secondary Structure AISTIPFHPLDAENNPRYKVKKKDAPKIVWHETEETGAHDWEGYIRIPFDKECAFTIQM CCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEE DDNGYLEIDNQKVVELNGSNSSKKAEGKKELKQGYHYVKLHHENLKVPDAIAPYPNAEEF CCCCEEEECCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHH VPQMDGVDLELWEIDAPTNLWKMEDAQKLLKCYNVVDYVTMPDPGQVWAYIGGWLYQAHL HHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHH KEIKDNVPEQSRNYYNSCALRMSIALSSFGKDLKGEAGAELIGDKANADTIGGKTHVITR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEH ARDMAAYVQKLLGDPDYPDAQDKGYCSPQPGDIIVFAGNGHVGMCPGDNIFIGSFLTGPI HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCEEECCCCCCCE WLINRSTLKDAE EEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA