Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is cysI [H]
Identifier: 187735787
GI number: 187735787
Start: 1569682
End: 1571322
Strand: Reverse
Name: cysI [H]
Synonym: Amuc_1294
Alternate gene names: 187735787
Gene position: 1571322-1569682 (Counterclockwise)
Preceding gene: 187735788
Following gene: 187735774
Centisome position: 58.98
GC content: 49.42
Gene sequence:
>1641_bases ATGATTAAAGAAGGATACACATCCAACGAACGAATCAAGGAGGAAAGCGATTTCCTCAGAGGGAATATCTCTAACCTCCT CCATGACGATAGCATTACCCATTTCCCGTCCGAAGAAGAATTTCTGCTGAAATTCCATGGAATCACCCAGCAGGATAACC GAGATGAACGGCTTATCCGAAAGAAAAACGGACAGGGACGAAATTGGTTATTCATGTTGAGGTTACGCCTCCCCGGAGGC CGTATCACACCCAGTCAATGGCTGGCTGCGGAAACGCTAAGCGACCAATTCGGTAACGGCACTCTTAAACTTACGACACG CCAAGCCATTCAAATCCACGGAGTCGTCAAGCAGGATTTGAAACAGACCATGAAAGATATCCATCACGCGGCCATCACCA CGATTGCCGCCAGTGGAGACGCCACACGCAATGTCATGGTTTCTCTGCACCCGGAAGATTCCGGCATCCATGAGACAGTC TTCAATCAAGCCCAGGAACTCTCCCGAAAACTGGAACCGCAGACACATGCCTATCATGAAATATGGCTGGATGCCAAACG AATCTACTCGGGCGAGGAGGAGGAGCCTCTGTACGGTCCCGGATATTTGCCGCGCAAATTTAAAATCGCTTTTACGCTTC CCCCGGAAAATGATGTGGATGTATACGCCCAGGACTTGAGCTTCGTGGCTATTGAAAAAGAGGGAAAACTCCTGGGATAT GATATCCTGGCCGGCGGAGGAATGGGCTATGCTTACGGCAATCCCGGATCTTTCCCCCGCCTTGCGGATATTATCGGATT CTGTTTCCCGGAACAGGTGGAGGAAGTAGCCCGGCAGGTGCTTTTGATCCATAAAGAATTCAGCACCCGCAGCAACAGAA AAACATCCCGGCTCAGGTACACCATTGCCGGTAAAGGACTGGGCTGGTTCACTAACGAACTTGCAACACGCCTTCCATTT CCTCTTCAAGAGGCCAAACCTTTTTCATTATCTACGAACGGAGATGCCGCAGATGTTCCTGGCCGACAAACCATTGAAAT TGAAGGCGGCCGCATCCAAAATTCAAACAGGCAACAGCTTAAAACCGCTTTTCACGAAATAGCTTCCATTCATCAAGGAG ATTTTTTCATCACAGGTAATCAAAATCTGGTCATTGACGGCATCACACCAGATACTGCCGTGCGAATCAAATCCATCATT AGGAAGTACAATCTTCTCCCCAACGATTCGGGACTCAGGCGCAATTCCTCCGCTTGTACCAGCCTGCCATTTTGTCCGCA GGCTCTTACAGACTCCGAAAGACTACTTCCAAAACTGGTGGATGAACTGGAATCACAGTTAAAAGAACTGGGGCTATGGG ACGAAGAAATTTCTATACGCATGACCGGGTGTCCCAACGGATGCTCCAGGCCGTATCTGGCAGAACTGGCTTTCGTCGGC AGAGGTCCGGGCAAGTACAATATCTGGATGGGCGGTTCCAGAAGAGGAGACAGACTAGGCTTCGTCTATCAGGAATCTGT ATCCGTAAAAGAAATCGTAGACGTGCTCCGACCAGTATTTGCACGTTTTGCGGCAGAACGCAACCAAGGGGAAGGATTCG GTGACTGGAGCATCCGCTCATTACATCCGCAATCTTTATAA
Upstream 100 bases:
>100_bases TCTCTTAGGCCTGCTCTCAGATAAACTCATCTTCTCCCCCCTGGAACAATCTATCTACAAACGCTGGGGGACAAATCTAG CTTAACCCACAGAAAATATT
Downstream 100 bases:
>100_bases AAGCATAAACATCCGGAGCCGTTTTTGCCGTAGACGGCTCCGGGACAAATCCTGCTATATTTGAAAATCAAAGAGATATT CCAGAAAACAAAATCATGAA
Product: Sulfite reductase (NADPH)
Products: NA
Alternate protein names: SiR-HP; SiRHP [H]
Number of amino acids: Translated: 546; Mature: 546
Protein sequence:
>546_residues MIKEGYTSNERIKEESDFLRGNISNLLHDDSITHFPSEEEFLLKFHGITQQDNRDERLIRKKNGQGRNWLFMLRLRLPGG RITPSQWLAAETLSDQFGNGTLKLTTRQAIQIHGVVKQDLKQTMKDIHHAAITTIAASGDATRNVMVSLHPEDSGIHETV FNQAQELSRKLEPQTHAYHEIWLDAKRIYSGEEEEPLYGPGYLPRKFKIAFTLPPENDVDVYAQDLSFVAIEKEGKLLGY DILAGGGMGYAYGNPGSFPRLADIIGFCFPEQVEEVARQVLLIHKEFSTRSNRKTSRLRYTIAGKGLGWFTNELATRLPF PLQEAKPFSLSTNGDAADVPGRQTIEIEGGRIQNSNRQQLKTAFHEIASIHQGDFFITGNQNLVIDGITPDTAVRIKSII RKYNLLPNDSGLRRNSSACTSLPFCPQALTDSERLLPKLVDELESQLKELGLWDEEISIRMTGCPNGCSRPYLAELAFVG RGPGKYNIWMGGSRRGDRLGFVYQESVSVKEIVDVLRPVFARFAAERNQGEGFGDWSIRSLHPQSL
Sequences:
>Translated_546_residues MIKEGYTSNERIKEESDFLRGNISNLLHDDSITHFPSEEEFLLKFHGITQQDNRDERLIRKKNGQGRNWLFMLRLRLPGG RITPSQWLAAETLSDQFGNGTLKLTTRQAIQIHGVVKQDLKQTMKDIHHAAITTIAASGDATRNVMVSLHPEDSGIHETV FNQAQELSRKLEPQTHAYHEIWLDAKRIYSGEEEEPLYGPGYLPRKFKIAFTLPPENDVDVYAQDLSFVAIEKEGKLLGY DILAGGGMGYAYGNPGSFPRLADIIGFCFPEQVEEVARQVLLIHKEFSTRSNRKTSRLRYTIAGKGLGWFTNELATRLPF PLQEAKPFSLSTNGDAADVPGRQTIEIEGGRIQNSNRQQLKTAFHEIASIHQGDFFITGNQNLVIDGITPDTAVRIKSII RKYNLLPNDSGLRRNSSACTSLPFCPQALTDSERLLPKLVDELESQLKELGLWDEEISIRMTGCPNGCSRPYLAELAFVG RGPGKYNIWMGGSRRGDRLGFVYQESVSVKEIVDVLRPVFARFAAERNQGEGFGDWSIRSLHPQSL >Mature_546_residues MIKEGYTSNERIKEESDFLRGNISNLLHDDSITHFPSEEEFLLKFHGITQQDNRDERLIRKKNGQGRNWLFMLRLRLPGG RITPSQWLAAETLSDQFGNGTLKLTTRQAIQIHGVVKQDLKQTMKDIHHAAITTIAASGDATRNVMVSLHPEDSGIHETV FNQAQELSRKLEPQTHAYHEIWLDAKRIYSGEEEEPLYGPGYLPRKFKIAFTLPPENDVDVYAQDLSFVAIEKEGKLLGY DILAGGGMGYAYGNPGSFPRLADIIGFCFPEQVEEVARQVLLIHKEFSTRSNRKTSRLRYTIAGKGLGWFTNELATRLPF PLQEAKPFSLSTNGDAADVPGRQTIEIEGGRIQNSNRQQLKTAFHEIASIHQGDFFITGNQNLVIDGITPDTAVRIKSII RKYNLLPNDSGLRRNSSACTSLPFCPQALTDSERLLPKLVDELESQLKELGLWDEEISIRMTGCPNGCSRPYLAELAFVG RGPGKYNIWMGGSRRGDRLGFVYQESVSVKEIVDVLRPVFARFAAERNQGEGFGDWSIRSLHPQSL
Specific function: Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate [H]
COG id: COG0155
COG function: function code P; Sulfite reductase, beta subunit (hemoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]
Homologues:
Organism=Escherichia coli, GI1789122, Length=548, Percent_Identity=37.7737226277372, Blast_Score=412, Evalue=1e-116, Organism=Saccharomyces cerevisiae, GI6322597, Length=573, Percent_Identity=41.7102966841187, Blast_Score=438, Evalue=1e-123,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011786 - InterPro: IPR005117 - InterPro: IPR006067 - InterPro: IPR006066 [H]
Pfam domain/function: PF01077 NIR_SIR; PF03460 NIR_SIR_ferr [H]
EC number: =1.8.1.2 [H]
Molecular weight: Translated: 61403; Mature: 61403
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00365 NIR_SIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKEGYTSNERIKEESDFLRGNISNLLHDDSITHFPSEEEFLLKFHGITQQDNRDERLIR CCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHH KKNGQGRNWLFMLRLRLPGGRITPSQWLAAETLSDQFGNGTLKLTTRQAIQIHGVVKQDL HCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEEEEHHHHHHHH KQTMKDIHHAAITTIAASGDATRNVMVSLHPEDSGIHETVFNQAQELSRKLEPQTHAYHE HHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH IWLDAKRIYSGEEEEPLYGPGYLPRKFKIAFTLPPENDVDVYAQDLSFVAIEKEGKLLGY HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEECCCEEEEEECCCCEEEE DILAGGGMGYAYGNPGSFPRLADIIGFCFPEQVEEVARQVLLIHKEFSTRSNRKTSRLRY EEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE TIAGKGLGWFTNELATRLPFPLQEAKPFSLSTNGDAADVPGRQTIEIEGGRIQNSNRQQL EEECCCCCHHHHHHHHHCCCCHHHCCCCEECCCCCCCCCCCCEEEEEECCEECCCCHHHH KTAFHEIASIHQGDFFITGNQNLVIDGITPDTAVRIKSIIRKYNLLPNDSGLRRNSSACT HHHHHHHHHHCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC SLPFCPQALTDSERLLPKLVDELESQLKELGLWDEEISIRMTGCPNGCSRPYLAELAFVG CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHCC RGPGKYNIWMGGSRRGDRLGFVYQESVSVKEIVDVLRPVFARFAAERNQGEGFGDWSIRS CCCCEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEC LHPQSL CCCCCC >Mature Secondary Structure MIKEGYTSNERIKEESDFLRGNISNLLHDDSITHFPSEEEFLLKFHGITQQDNRDERLIR CCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHH KKNGQGRNWLFMLRLRLPGGRITPSQWLAAETLSDQFGNGTLKLTTRQAIQIHGVVKQDL HCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCEEEEHHHHHHHH KQTMKDIHHAAITTIAASGDATRNVMVSLHPEDSGIHETVFNQAQELSRKLEPQTHAYHE HHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH IWLDAKRIYSGEEEEPLYGPGYLPRKFKIAFTLPPENDVDVYAQDLSFVAIEKEGKLLGY HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEECCCEEEEEECCCCEEEE DILAGGGMGYAYGNPGSFPRLADIIGFCFPEQVEEVARQVLLIHKEFSTRSNRKTSRLRY EEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE TIAGKGLGWFTNELATRLPFPLQEAKPFSLSTNGDAADVPGRQTIEIEGGRIQNSNRQQL EEECCCCCHHHHHHHHHCCCCHHHCCCCEECCCCCCCCCCCCEEEEEECCEECCCCHHHH KTAFHEIASIHQGDFFITGNQNLVIDGITPDTAVRIKSIIRKYNLLPNDSGLRRNSSACT HHHHHHHHHHCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC SLPFCPQALTDSERLLPKLVDELESQLKELGLWDEEISIRMTGCPNGCSRPYLAELAFVG CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHCC RGPGKYNIWMGGSRRGDRLGFVYQESVSVKEIVDVLRPVFARFAAERNQGEGFGDWSIRS CCCCEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEC LHPQSL CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12235376 [H]