Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735718
Identifier: 187735718
GI number: 187735718
Start: 1471661
End: 1472377
Strand: Direct
Name: 187735718
Synonym: Amuc_1224
Alternate gene names: NA
Gene position: 1471661-1472377 (Clockwise)
Preceding gene: 187735717
Following gene: 187735719
Centisome position: 55.24
GC content: 50.49
Gene sequence:
>717_bases ATGTTGATTGCGGTGGCAGTGACAGTGGGTGTTCAGGTGGCTTTGTGTGCTGTGCTTGTAGCCATACATTTGCAGGATAT GTGGTTTCCCTCCGTCCAGGGTGGGGAAGTGGAAATGACGTTTGTGTCCCCGTCCGAAGAAGTTTCTCAGGAGATGGAAG AAGTTCAGCCTACATCTGTTGTTCCGGTTGCAGCTCCTTCCACAGTCAGCCCTGTTCCGGAGATTGCGTCAGATGAAGAC TTATTGGCGATGAAGCTGCCGGAAAATGAAGATTGTTCCGAAATGAAGGATTTTCTTTTGGATGAAGCTCCTTCCGAACT CTTGCCGGAGGAGCTCGCCGCCATGCGGATTTCCATGAATGAAGTAAAGCGAAGGCAGCCTGTGAAGCGCCCGGCGGTAT CCCTGCCGGGGCGTCCGGAACCGGATCAGAATATTTCTCCTGATAAAAAGGTGCGTTATAAACATGCTCCGTCCTTGCCC AATTCCGTCAATTCTTCTAAAGTCGGGAAGGTGAATGCCGTGGTGAAAGTAGTGGTTGGAGTAAATTCCCATGGGGAACC TTCATCCGTCAATCTTCTTCAGTCAACGGGAAATGCGGAATTGGACCGCCTTTTTATGCGTTGGGTGAGAGAGAATTGGA CTTTTTATCCGGCGGAAAAGGACGGTGTGCCCATTGCTTCCAAGGTGGTGGTGCCCGTCAGGCTGAATATAGATTAA
Upstream 100 bases:
>100_bases TGATATATTGAACAGGTGCATCCCCATTCCCTGCCCGTTTTTTATGGATGAAAAGCCTGGAATTGTAAAATTCACTCCCC ATTCCACTTCCAGATCCGCA
Downstream 100 bases:
>100_bases CCTGTACAAGGAAATATAAAGATGCTTCCGGAGAAGACAGAGAATAGGCCCGTTTATGTGATCGGCCACCAGAATCCGGA TACGGATGCTATTTGTTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MLIAVAVTVGVQVALCAVLVAIHLQDMWFPSVQGGEVEMTFVSPSEEVSQEMEEVQPTSVVPVAAPSTVSPVPEIASDED LLAMKLPENEDCSEMKDFLLDEAPSELLPEELAAMRISMNEVKRRQPVKRPAVSLPGRPEPDQNISPDKKVRYKHAPSLP NSVNSSKVGKVNAVVKVVVGVNSHGEPSSVNLLQSTGNAELDRLFMRWVRENWTFYPAEKDGVPIASKVVVPVRLNID
Sequences:
>Translated_238_residues MLIAVAVTVGVQVALCAVLVAIHLQDMWFPSVQGGEVEMTFVSPSEEVSQEMEEVQPTSVVPVAAPSTVSPVPEIASDED LLAMKLPENEDCSEMKDFLLDEAPSELLPEELAAMRISMNEVKRRQPVKRPAVSLPGRPEPDQNISPDKKVRYKHAPSLP NSVNSSKVGKVNAVVKVVVGVNSHGEPSSVNLLQSTGNAELDRLFMRWVRENWTFYPAEKDGVPIASKVVVPVRLNID >Mature_238_residues MLIAVAVTVGVQVALCAVLVAIHLQDMWFPSVQGGEVEMTFVSPSEEVSQEMEEVQPTSVVPVAAPSTVSPVPEIASDED LLAMKLPENEDCSEMKDFLLDEAPSELLPEELAAMRISMNEVKRRQPVKRPAVSLPGRPEPDQNISPDKKVRYKHAPSLP NSVNSSKVGKVNAVVKVVVGVNSHGEPSSVNLLQSTGNAELDRLFMRWVRENWTFYPAEKDGVPIASKVVVPVRLNID
Specific function: Unknown
COG id: COG0810
COG function: function code M; Periplasmic protein TonB, links inner and outer membranes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25986; Mature: 25986
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIAVAVTVGVQVALCAVLVAIHLQDMWFPSVQGGEVEMTFVSPSEEVSQEMEEVQPTSV CEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCE VPVAAPSTVSPVPEIASDEDLLAMKLPENEDCSEMKDFLLDEAPSELLPEELAAMRISMN EEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH EVKRRQPVKRPAVSLPGRPEPDQNISPDKKVRYKHAPSLPNSVNSSKVGKVNAVVKVVVG HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCHHHEEEEEEEE VNSHGEPSSVNLLQSTGNAELDRLFMRWVRENWTFYPAEKDGVPIASKVVVPVRLNID CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEEEEEEEECC >Mature Secondary Structure MLIAVAVTVGVQVALCAVLVAIHLQDMWFPSVQGGEVEMTFVSPSEEVSQEMEEVQPTSV CEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCE VPVAAPSTVSPVPEIASDEDLLAMKLPENEDCSEMKDFLLDEAPSELLPEELAAMRISMN EEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH EVKRRQPVKRPAVSLPGRPEPDQNISPDKKVRYKHAPSLPNSVNSSKVGKVNAVVKVVVG HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCHHHEEEEEEEE VNSHGEPSSVNLLQSTGNAELDRLFMRWVRENWTFYPAEKDGVPIASKVVVPVRLNID CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA