Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is yoaA [C]
Identifier: 187735691
GI number: 187735691
Start: 1433207
End: 1435192
Strand: Direct
Name: yoaA [C]
Synonym: Amuc_1197
Alternate gene names: 187735691
Gene position: 1433207-1435192 (Clockwise)
Preceding gene: 187735690
Following gene: 187735695
Centisome position: 53.8
GC content: 58.71
Gene sequence:
>1986_bases ATGAAGGCCGCCGGGGAAGAGGGCATGGAAGGCGTCAGCGCTTTTGAGGCTTATGTCCACCGGGCATTTGCCCCGGACGG ATTGTTTTCCCGTGCCAGGGATTTTGAGTACCGGGCGGAGCAGCAGAGCATGGCCCTGGCTGTGGCGAGGGCGCTCCAAG TGGATGCGCCGCTGCTGGTGGAGGCCGGCACAGGCGTGGGCAAGTCCCTGGGGTATTTGCTGCCGGCGGTGAAGTTTGCT TTGGATTTTGACCGGAAGGCGGTGATTTCCACGCATACCATCAATTTGCAGGAGCAGTTGTTCAACAAGGATATTCCGCT GCTGCGCACCGCCCTGGGGATTGATTTTTCCGCCGCCCTGCTGAAGGGCAGGCAGAATTACCTGTGCCATACCCGCCTGC GGCGCGCGCTGGCGCAGATGGATTCCCTCTTTACGCAGGGTGAGGCCGCGGAGTTGAAGAGGATCCAGGACTGGGCCCTG AGAACGCAGGACGGCACCCTGAGCGATATGGCATTCCGGCCGTCTTCCAAGGTATGGGCCATGGTCTGCAGCGAACCGCA TGCGTGCAGCATGCGCCATTGCGGCCCTTCCTGTCCGTACCAGGCAGCCCGCAAGCGGGTTCTGGAGGCCAAAGTAGTGG TGCTTAACCATACCCTGTTTTTCGGGCTGATGGCCCAGGCGGAGGATTCCGAGGAGGCGGGGTTCGTGTTTCCCGGGGAT TTTGTGATTCTGGACGAGGCTCACATGATTGAGAACATCGCCGCCCGCCAGCTAGGCGTCCAGCTCTCGGAACCGCATTT GAATTATGAATTGCTGCGGATGTACAATCCGCGCACGCACAAGGGGTTGCTGAAACCGCTGAACAATCCGTCCCTGTTTC AGCGGGTTCAGGACGTGATGGACGCCTCCGGCCTGTTTTTCCAGAATGCGCGGGATGACCTGGGGTTTGCTGGTTCCGGA AAGATTGTCCGCATTCTTCAGCCGGAGTGGTCGCAGGATATTCTTTCTCAGCCTTTGATGGAACTGATCGGGGAATTGAA AACGGAGAGGGAGAAACAGGAGGAAAATGCAGCCGTGAAGGATGAACTGGCGGATATGGCCGCCCGGATGGAGGAGGCGC AGGCTTCCCTGAAGGTGCTGATGGACATGACGGAGGAAGGTCACGTATATTGGGCGGAGCGTTCCGGTCCGGATGGAAGG AACATGAGCGTTTGCTCCGCTCCCGTGGAGGTGGGAGATATTTTGAGGGAACGCCTGTTTTCCGCCGGACGTTCCGCCAT TCTGACTTCCGCCACGCTGGGGACCGGAGATGCGGACATGAGTTATTTTGCGGGGCGCGTAGGGGCGGAACGCATTCGGA AGCTTCAGATCGGAAGCCCGTTCAATTACCGGGAGCAGATGCGGCTGATTGTAGCCCGCTCCATGCCGGAGCCGGACCAG CCGGAGTATGCGGAAGTTTTGCCGGAATGGATTAAAAGGTATCTGGCGGAGTCCCGCGGCAGGGCTTTCGTGCTGTTTAC CAGCTATCGTCTGATGGTTCAGGCGGCGGAGAAAGTGCGTCCTTTTTGCGAGGAACAGGGATGGACGCTGTATGTGCAGG GGCAGGATATGCAGCGGCATGCCATGCTGGAGGCGTTCCGGAAGGATGTGGACAGCGTGCTTTTCGGAACGGACAGTTTC TGGACCGGGGTGGATGTGCCGGGAGAATCTCTTTCCAACGTTATTGTCACGCGCTTGCCGTTTGAAGTGCCGGATCATCC GCTTGTGGAGTCCCGTTTTGAGAGTATCAGGGAACGCGGGGGGAATCCGTTTTACGAATATTCCGTACCTGTAGCCATTC TGAAGCTGCGGCAGGGGGTAGGGCGGCTGATCCGCACCAGGAGCGATTCCGGCATGGTGGTGATTCTTGATCCGCGCGTA GCTACCAAGAGGTATGGAATGCGTTTTCTCAAGTCCCTGCCGGAGGCCCGGCTGGAGTTTGTATGA
Upstream 100 bases:
>100_bases TGCGCTCCATGTTCTATGACCTGCCTGAAAAGGTGAATCTTCCGCCGGTTTCTTCCCGCCAGCTTCCCGTGGGCCAGTAA GGGGGGGCAGGTTCCCACAT
Downstream 100 bases:
>100_bases GTTTTTTTCAGGATGCCCCGGAATTGTTCCGTTGCCTCTCCTGCCGCATCAGGAGGTAGCTGAGGGGTTGTTCCAGGCGC GCTTCTTCCAGAAGGGAGCG
Product: helicase c2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 661; Mature: 661
Protein sequence:
>661_residues MKAAGEEGMEGVSAFEAYVHRAFAPDGLFSRARDFEYRAEQQSMALAVARALQVDAPLLVEAGTGVGKSLGYLLPAVKFA LDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAALLKGRQNYLCHTRLRRALAQMDSLFTQGEAAELKRIQDWAL RTQDGTLSDMAFRPSSKVWAMVCSEPHACSMRHCGPSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGFVFPGD FVILDEAHMIENIAARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLNNPSLFQRVQDVMDASGLFFQNARDDLGFAGSG KIVRILQPEWSQDILSQPLMELIGELKTEREKQEENAAVKDELADMAARMEEAQASLKVLMDMTEEGHVYWAERSGPDGR NMSVCSAPVEVGDILRERLFSAGRSAILTSATLGTGDADMSYFAGRVGAERIRKLQIGSPFNYREQMRLIVARSMPEPDQ PEYAEVLPEWIKRYLAESRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDVDSVLFGTDSF WTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAILKLRQGVGRLIRTRSDSGMVVILDPRV ATKRYGMRFLKSLPEARLEFV
Sequences:
>Translated_661_residues MKAAGEEGMEGVSAFEAYVHRAFAPDGLFSRARDFEYRAEQQSMALAVARALQVDAPLLVEAGTGVGKSLGYLLPAVKFA LDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAALLKGRQNYLCHTRLRRALAQMDSLFTQGEAAELKRIQDWAL RTQDGTLSDMAFRPSSKVWAMVCSEPHACSMRHCGPSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGFVFPGD FVILDEAHMIENIAARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLNNPSLFQRVQDVMDASGLFFQNARDDLGFAGSG KIVRILQPEWSQDILSQPLMELIGELKTEREKQEENAAVKDELADMAARMEEAQASLKVLMDMTEEGHVYWAERSGPDGR NMSVCSAPVEVGDILRERLFSAGRSAILTSATLGTGDADMSYFAGRVGAERIRKLQIGSPFNYREQMRLIVARSMPEPDQ PEYAEVLPEWIKRYLAESRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDVDSVLFGTDSF WTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAILKLRQGVGRLIRTRSDSGMVVILDPRV ATKRYGMRFLKSLPEARLEFV >Mature_661_residues MKAAGEEGMEGVSAFEAYVHRAFAPDGLFSRARDFEYRAEQQSMALAVARALQVDAPLLVEAGTGVGKSLGYLLPAVKFA LDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAALLKGRQNYLCHTRLRRALAQMDSLFTQGEAAELKRIQDWAL RTQDGTLSDMAFRPSSKVWAMVCSEPHACSMRHCGPSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGFVFPGD FVILDEAHMIENIAARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLNNPSLFQRVQDVMDASGLFFQNARDDLGFAGSG KIVRILQPEWSQDILSQPLMELIGELKTEREKQEENAAVKDELADMAARMEEAQASLKVLMDMTEEGHVYWAERSGPDGR NMSVCSAPVEVGDILRERLFSAGRSAILTSATLGTGDADMSYFAGRVGAERIRKLQIGSPFNYREQMRLIVARSMPEPDQ PEYAEVLPEWIKRYLAESRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDVDSVLFGTDSF WTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAILKLRQGVGRLIRTRSDSGMVVILDPRV ATKRYGMRFLKSLPEARLEFV
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=643, Percent_Identity=34.6811819595645, Blast_Score=316, Evalue=4e-87, Organism=Escherichia coli, GI1787018, Length=680, Percent_Identity=28.3823529411765, Blast_Score=187, Evalue=1e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 74255; Mature: 74255
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAAGEEGMEGVSAFEAYVHRAFAPDGLFSRARDFEYRAEQQSMALAVARALQVDAPLLV CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEE EAGTGVGKSLGYLLPAVKFALDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAAL ECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHCCCCHHHHHHHCCCHHHHH LKGRQNYLCHTRLRRALAQMDSLFTQGEAAELKRIQDWALRTQDGTLSDMAFRPSSKVWA HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHCEECCCCCEEE MVCSEPHACSMRHCGPSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGFVFPGD EEECCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC FVILDEAHMIENIAARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLNNPSLFQRVQDVM EEEECCHHHHHHHHHHHHCCEECCCCCCHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHH DASGLFFQNARDDLGFAGSGKIVRILQPEWSQDILSQPLMELIGELKTEREKQEENAAVK CCCCCEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DELADMAARMEEAQASLKVLMDMTEEGHVYWAERSGPDGRNMSVCSAPVEVGDILRERLF HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH SAGRSAILTSATLGTGDADMSYFAGRVGAERIRKLQIGSPFNYREQMRLIVARSMPEPDQ HCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCC PEYAEVLPEWIKRYLAESRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRH CCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH AMLEAFRKDVDSVLFGTDSFWTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERG HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC GNPFYEYSVPVAILKLRQGVGRLIRTRSDSGMVVILDPRVATKRYGMRFLKSLPEARLEF CCCCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHCC V C >Mature Secondary Structure MKAAGEEGMEGVSAFEAYVHRAFAPDGLFSRARDFEYRAEQQSMALAVARALQVDAPLLV CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEE EAGTGVGKSLGYLLPAVKFALDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAAL ECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHCCCCHHHHHHHCCCHHHHH LKGRQNYLCHTRLRRALAQMDSLFTQGEAAELKRIQDWALRTQDGTLSDMAFRPSSKVWA HCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHCEECCCCCEEE MVCSEPHACSMRHCGPSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGFVFPGD EEECCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC FVILDEAHMIENIAARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLNNPSLFQRVQDVM EEEECCHHHHHHHHHHHHCCEECCCCCCHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHH DASGLFFQNARDDLGFAGSGKIVRILQPEWSQDILSQPLMELIGELKTEREKQEENAAVK CCCCCEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DELADMAARMEEAQASLKVLMDMTEEGHVYWAERSGPDGRNMSVCSAPVEVGDILRERLF HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH SAGRSAILTSATLGTGDADMSYFAGRVGAERIRKLQIGSPFNYREQMRLIVARSMPEPDQ HCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCC PEYAEVLPEWIKRYLAESRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRH CCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH AMLEAFRKDVDSVLFGTDSFWTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERG HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC GNPFYEYSVPVAILKLRQGVGRLIRTRSDSGMVVILDPRVATKRYGMRFLKSLPEARLEF CCCCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHCC V C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]