Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735652
Identifier: 187735652
GI number: 187735652
Start: 1388421
End: 1389017
Strand: Direct
Name: 187735652
Synonym: Amuc_1158
Alternate gene names: NA
Gene position: 1388421-1389017 (Clockwise)
Preceding gene: 187735651
Following gene: 187735653
Centisome position: 52.12
GC content: 56.45
Gene sequence:
>597_bases ATGACGCAAGCAGAAACAGCATGCCCGGATGCCTGGGGAAGCCATTTCCTTGAATACCGGGGAAGGCTTCTTGCCCTGGC CCGGAGGAATTTGAATCCGGTTCTTGCCCGGCGCGTTTCGGCGGAAGATGTGGTTCAGGAGGCTCTGCTGGCAGCCTGCG GGAAAATGGCTTTTTTTGAAAACAATCCGGAGATTCCTGTCTATTTCAAACTGCGGACGATTCTGTTCCAGACCCTTACG GCTATGGAAAGGAAGCATCTGCAATGCCTCAAGAGAGACGCCTGCAGGGAAGTGAATGTGACGGATGACGGCGTGGGGCC CGCTGCCCGGTTGGATTGGAACCGGTTTGCAGATACCGTGACCGGGCCTCTTACCCGTGCCGTCAGGGCGGATCGTTATA CATTGCTCCGGAAAGCGGTCGAGGCGCTGCCCGAAAACGATCGGCAGATTCTTGAACTCCGCCATTTTGACGACATGTCC AATGCGGATTGTGCCGAAGTCCTGCATATTGGGCCGAAAGCCGCAAGCATCCGCTATGTGCGGGCGCTGCAGCGGCTTCG GAAGCAGCTGATGGAGTTAACCGAGTTTCAGCCATGA
Upstream 100 bases:
>100_bases ATGCACCTGCCGTATCCCGGAATCGGCCGGATAGGAAGGAGTGCGGCGGGATATGTCTATCTGCCCGGAAAATGAGAAAG GATAAAAAAGACACGGTACA
Downstream 100 bases:
>100_bases AGGGGAAGATTTCTCTGGAAGATCTGGTTGAACAATTCCTGGATCAGTGCCGTTCCGGCAATGTTCCCGATATTCAGGAT TTTGCCGGGGCGCATCCGGA
Product: RNA polymerase, sigma-24 subunit, ECF subfamily
Products: NA
Alternate protein names: RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor CnrH
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MTQAETACPDAWGSHFLEYRGRLLALARRNLNPVLARRVSAEDVVQEALLAACGKMAFFENNPEIPVYFKLRTILFQTLT AMERKHLQCLKRDACREVNVTDDGVGPAARLDWNRFADTVTGPLTRAVRADRYTLLRKAVEALPENDRQILELRHFDDMS NADCAEVLHIGPKAASIRYVRALQRLRKQLMELTEFQP
Sequences:
>Translated_198_residues MTQAETACPDAWGSHFLEYRGRLLALARRNLNPVLARRVSAEDVVQEALLAACGKMAFFENNPEIPVYFKLRTILFQTLT AMERKHLQCLKRDACREVNVTDDGVGPAARLDWNRFADTVTGPLTRAVRADRYTLLRKAVEALPENDRQILELRHFDDMS NADCAEVLHIGPKAASIRYVRALQRLRKQLMELTEFQP >Mature_197_residues TQAETACPDAWGSHFLEYRGRLLALARRNLNPVLARRVSAEDVVQEALLAACGKMAFFENNPEIPVYFKLRTILFQTLTA MERKHLQCLKRDACREVNVTDDGVGPAARLDWNRFADTVTGPLTRAVRADRYTLLRKAVEALPENDRQILELRHFDDMSN ADCAEVLHIGPKAASIRYVRALQRLRKQLMELTEFQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22595; Mature: 22464
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQAETACPDAWGSHFLEYRGRLLALARRNLNPVLARRVSAEDVVQEALLAACGKMAFFE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCC NNPEIPVYFKLRTILFQTLTAMERKHLQCLKRDACREVNVTDDGVGPAARLDWNRFADTV CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHH TGPLTRAVRADRYTLLRKAVEALPENDRQILELRHFDDMSNADCAEVLHIGPKAASIRYV HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHH RALQRLRKQLMELTEFQP HHHHHHHHHHHHHHCCCC >Mature Secondary Structure TQAETACPDAWGSHFLEYRGRLLALARRNLNPVLARRVSAEDVVQEALLAACGKMAFFE CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCC NNPEIPVYFKLRTILFQTLTAMERKHLQCLKRDACREVNVTDDGVGPAARLDWNRFADTV CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHH TGPLTRAVRADRYTLLRKAVEALPENDRQILELRHFDDMSNADCAEVLHIGPKAASIRYV HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHH RALQRLRKQLMELTEFQP HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA