Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735498
Identifier: 187735498
GI number: 187735498
Start: 1193888
End: 1195174
Strand: Reverse
Name: 187735498
Synonym: Amuc_1002
Alternate gene names: NA
Gene position: 1195174-1193888 (Counterclockwise)
Preceding gene: 187735499
Following gene: 187735497
Centisome position: 44.86
GC content: 53.69
Gene sequence:
>1287_bases ATGAAACTTTTATCGTCTGTCCTGTTCTGCCTGATGTCGTGCGTGCTGGCTCTGGCGGCAAATTCCGCCCTTTCCAGCCA GGAATTGACCTCCAGGCAGAAACACATCATCACCATTGCCGCCTATACCGGCAGAGGGGATTTGCATCAGCTGCAGCCGG CCCTGAATGCCGCCTTGGACAGTGGATTGACGATAAATGAAATCCGGGAAGTTTTAGTGCATTCCTACGCCTATTGCGGG TTTCCGCGAAGCCTGAGGGGGTTGCAGGCATTCATCTCCGTGCTGGATAAAAGAAAGTCCCGAGGCATAGCCGATGCCCC GGGACAAGATGCCTGCCCCACAAAGGACAAGCGCAGCCGCTACGATCGCGGGTGCGCCATTCTTGCGGAAATCTCCGGCA TTCCCGTCAATGCGCCGAAAGTTGCCTATGCCGAATTTGCCCCGGTCATGGAACGTTTCCTGAAAGAACACCTTTTTGCA GATATTTTTGAACGGGACGTTCTGACCTATGATGAACGCGAATTGGCTACCGTATCCATCCTCGCGGCCATAGGCGGTGT GGAACCAATGGCCCGCTCTCACATGGGCATCTGCCTGAATCTGGGCATAACACCCGCACAGCTGCACCAGCTGCTTGACA TCGTGTCCAGGAACATCGGCCCCGGGGAAGCAGACGCAGTCCGGAAAGAGCTGAACACGCTGTTGCAGGCAAAAGGGCTG CCTGTTGTCCGCAGAACCGGACAAGATGCGGGAAAACCGCTGGTTGTTTATTTCTCCGCAACGGGCAATACCAAAGCGGT GGCGGAACAAATTGCGAAACTGACCGGAGCGGATCTCTACCGGATTGAAGCCGCCGAGGCCTACAATGCCGACCCTTACC GCGACAGCGACCGTGTCAAAAAAGAAGCTTATGAAAACCTGCGCCCAAAGGTCGCTAACTTGCCTGAAGCCTCCCTGATG GCGAAATATGATACTATCTTCGTCGGCTCTCCAATCTGGTGGCATCAGCCTGCCATGGTGATTTGCACCTTTTTAGAGGC ATTTGACCTGAAAGGGAAAACGCTCATTCCCTTCTTTACTTATGACGCGACTACTTATTTAAACGAATCCATGCAACAAA TTTACAGGCTTACGCCCCATTCCCGGCACATTCCGTCAACTCTTCCAGAAGACCTTGACCCAGGAGATATTACAACTCCC GGACGTGCCGATGATGAGGGAATTGACATGCCGGGCAATGCCGCAGGCGTCAAAACATGGCTGAAAAGAATCGGCATGCT GCCATGA
Upstream 100 bases:
>100_bases GCATATCAAGACCTACTACGTGCCGGAATACGTGGATCAGGCTGTCGGAAAGCTGGCGGAATTCTTCGGGAAAAACCTGT AAAACTGCTCTCCCAGGTTC
Downstream 100 bases:
>100_bases CTTTTGCCTGGGTTCTTTCATCCCCCCTCAGTTTTTCAATCCATATGACCCATTTTGCAATACCATCACCTATGGCCGTT TTTGCATTGCCCTTTTTGCG
Product: Carboxymuconolactone decarboxylase
Products: NA
Alternate protein names: Carboxymuconolactone Decarboxylase; Twin-Arginine Translocation Pathway Signal; 4-Carboxymuconolactone Decarboxylase; Carboxymuconolactone Decarboxylase Family Protein; Flavodoxin Protein; Exported; Gamma-Carboxymuconolactone Decarboxylase Subunit; Carboxymuconolactone Decarboxylase-Like Protein; Cupin 2 Domain-Containing Protein; Decarboxylase Family Protein; Flavodoxin Family Protein; Aldo/Keto Reductase; Lipoprotein; Exported Protein
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MKLLSSVLFCLMSCVLALAANSALSSQELTSRQKHIITIAAYTGRGDLHQLQPALNAALDSGLTINEIREVLVHSYAYCG FPRSLRGLQAFISVLDKRKSRGIADAPGQDACPTKDKRSRYDRGCAILAEISGIPVNAPKVAYAEFAPVMERFLKEHLFA DIFERDVLTYDERELATVSILAAIGGVEPMARSHMGICLNLGITPAQLHQLLDIVSRNIGPGEADAVRKELNTLLQAKGL PVVRRTGQDAGKPLVVYFSATGNTKAVAEQIAKLTGADLYRIEAAEAYNADPYRDSDRVKKEAYENLRPKVANLPEASLM AKYDTIFVGSPIWWHQPAMVICTFLEAFDLKGKTLIPFFTYDATTYLNESMQQIYRLTPHSRHIPSTLPEDLDPGDITTP GRADDEGIDMPGNAAGVKTWLKRIGMLP
Sequences:
>Translated_428_residues MKLLSSVLFCLMSCVLALAANSALSSQELTSRQKHIITIAAYTGRGDLHQLQPALNAALDSGLTINEIREVLVHSYAYCG FPRSLRGLQAFISVLDKRKSRGIADAPGQDACPTKDKRSRYDRGCAILAEISGIPVNAPKVAYAEFAPVMERFLKEHLFA DIFERDVLTYDERELATVSILAAIGGVEPMARSHMGICLNLGITPAQLHQLLDIVSRNIGPGEADAVRKELNTLLQAKGL PVVRRTGQDAGKPLVVYFSATGNTKAVAEQIAKLTGADLYRIEAAEAYNADPYRDSDRVKKEAYENLRPKVANLPEASLM AKYDTIFVGSPIWWHQPAMVICTFLEAFDLKGKTLIPFFTYDATTYLNESMQQIYRLTPHSRHIPSTLPEDLDPGDITTP GRADDEGIDMPGNAAGVKTWLKRIGMLP >Mature_428_residues MKLLSSVLFCLMSCVLALAANSALSSQELTSRQKHIITIAAYTGRGDLHQLQPALNAALDSGLTINEIREVLVHSYAYCG FPRSLRGLQAFISVLDKRKSRGIADAPGQDACPTKDKRSRYDRGCAILAEISGIPVNAPKVAYAEFAPVMERFLKEHLFA DIFERDVLTYDERELATVSILAAIGGVEPMARSHMGICLNLGITPAQLHQLLDIVSRNIGPGEADAVRKELNTLLQAKGL PVVRRTGQDAGKPLVVYFSATGNTKAVAEQIAKLTGADLYRIEAAEAYNADPYRDSDRVKKEAYENLRPKVANLPEASLM AKYDTIFVGSPIWWHQPAMVICTFLEAFDLKGKTLIPFFTYDATTYLNESMQQIYRLTPHSRHIPSTLPEDLDPGDITTP GRADDEGIDMPGNAAGVKTWLKRIGMLP
Specific function: Unknown
COG id: COG0599
COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46990; Mature: 46990
Theoretical pI: Translated: 6.99; Mature: 6.99
Prosite motif: PS00201 FLAVODOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLSSVLFCLMSCVLALAANSALSSQELTSRQKHIITIAAYTGRGDLHQLQPALNAALD CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHH SGLTINEIREVLVHSYAYCGFPRSLRGLQAFISVLDKRKSRGIADAPGQDACPTKDKRSR CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH YDRGCAILAEISGIPVNAPKVAYAEFAPVMERFLKEHLFADIFERDVLTYDERELATVSI HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LAAIGGVEPMARSHMGICLNLGITPAQLHQLLDIVSRNIGPGEADAVRKELNTLLQAKGL HHHHCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC PVVRRTGQDAGKPLVVYFSATGNTKAVAEQIAKLTGADLYRIEAAEAYNADPYRDSDRVK CHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCHHHHH KEAYENLRPKVANLPEASLMAKYDTIFVGSPIWWHQPAMVICTFLEAFDLKGKTLIPFFT HHHHHHCCCHHCCCCCHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE YDATTYLNESMQQIYRLTPHSRHIPSTLPEDLDPGDITTPGRADDEGIDMPGNAAGVKTW CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LKRIGMLP HHHHCCCC >Mature Secondary Structure MKLLSSVLFCLMSCVLALAANSALSSQELTSRQKHIITIAAYTGRGDLHQLQPALNAALD CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHH SGLTINEIREVLVHSYAYCGFPRSLRGLQAFISVLDKRKSRGIADAPGQDACPTKDKRSR CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH YDRGCAILAEISGIPVNAPKVAYAEFAPVMERFLKEHLFADIFERDVLTYDERELATVSI HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LAAIGGVEPMARSHMGICLNLGITPAQLHQLLDIVSRNIGPGEADAVRKELNTLLQAKGL HHHHCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC PVVRRTGQDAGKPLVVYFSATGNTKAVAEQIAKLTGADLYRIEAAEAYNADPYRDSDRVK CHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCHHHHH KEAYENLRPKVANLPEASLMAKYDTIFVGSPIWWHQPAMVICTFLEAFDLKGKTLIPFFT HHHHHHCCCHHCCCCCHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE YDATTYLNESMQQIYRLTPHSRHIPSTLPEDLDPGDITTPGRADDEGIDMPGNAAGVKTW CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LKRIGMLP HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA