Click here to switch to the map view.

The map label for this gene is 187735486

Identifier: 187735486

GI number: 187735486

Start: 1181611

End: 1182426

Strand: Direct

Name: 187735486

Synonym: Amuc_0988

Alternate gene names: NA

Gene position: 1181611-1182426 (Clockwise)

Preceding gene: 187735485

Following gene: 187735489

Centisome position: 44.35

GC content: 58.09

Gene sequence:

>816_bases
ATGATGGCTTTCATAGAACCTCATATACATATGGTGTGCCGCACCACGGACGAATACCGGGCCATGGCGCAGGCCGGCTG
CCTGGCGGTAGGGGAACCGGCGTTCTGGGCCGGTTACGACCGTTCGTCCGCGGACGGTTTCCGGGATTATTTCGTACAGC
TTACGGAATGCGAACCCGCCAGGGCGGCCAAGTTCGGCATGGACCATTACACATGGCTGTGCATCAATCCCAAGGAGGCG
CAGGACGTGGCTTTCGCGCGGGATGTGATGAAACTGATTCCGGAGTTCATTGACCGGCCCAATGTCCTCGGCATCGGGGA
AATAGGGCTGAACCGGAATACTTCCCATGAAATGACTATTTTTGAAGAGCATCTGGATCTGGCGGTGCGCCTCAACCAGC
TTGTGCTGATTCACACTCCCCATCTGGAAGACAAGCTTAAGGGGACCGTAATGATTCTTTCCGCCCTGAAAAACCGTCCG
GATCTGGACCCTTGCCGCGTGCTGGTGGATCACTGTGAGGAACATACCTTCCCGCTGGTGAAGGAGGCCGGTTACTGGGC
CGGGCTGACCCTTTATCCCACCAGTAAGCTGAATCCCAAGCGGGCGGGGGATATTCTGGAATTGTACGGAATGGACCGTG
TCTGGGCCAATTCCGCGGCGGACTGGGGGGATTCCGATCCCCTGGCGCTGACGGCCCTGGCCTGCGAGCTGCGCAGGCGC
GGTTTTTCCCGGCAGGAAACGGAACGTCTTCTCCTGGAAAATCCGGAGACATTCATGGGACAGTCCCCGAAGTTCCGGAA
AGTGTCGTCCCGCTAA

Upstream 100 bases:

>100_bases
TCCGGGCCATTCTGGAAGCCCTTTCCTACAGGGATGACACCGTGCCGGAAACCGCCGCAGCCAAAGCGGCCTGCGGAGCC
CCGAACCTCAGCAAATAAGA

Downstream 100 bases:

>100_bases
TTCCGCCCGAGGCGCGGCGGAGGGTACGGCCCTCTAGTCCCCGTCCGGGAAAAAGACGGTGAGGACGGCGCCCAGGATGA
CCGCCGCGTCATCCAGAAGG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MMAFIEPHIHMVCRTTDEYRAMAQAGCLAVGEPAFWAGYDRSSADGFRDYFVQLTECEPARAAKFGMDHYTWLCINPKEA
QDVAFARDVMKLIPEFIDRPNVLGIGEIGLNRNTSHEMTIFEEHLDLAVRLNQLVLIHTPHLEDKLKGTVMILSALKNRP
DLDPCRVLVDHCEEHTFPLVKEAGYWAGLTLYPTSKLNPKRAGDILELYGMDRVWANSAADWGDSDPLALTALACELRRR
GFSRQETERLLLENPETFMGQSPKFRKVSSR

Sequences:

>Translated_271_residues
MMAFIEPHIHMVCRTTDEYRAMAQAGCLAVGEPAFWAGYDRSSADGFRDYFVQLTECEPARAAKFGMDHYTWLCINPKEA
QDVAFARDVMKLIPEFIDRPNVLGIGEIGLNRNTSHEMTIFEEHLDLAVRLNQLVLIHTPHLEDKLKGTVMILSALKNRP
DLDPCRVLVDHCEEHTFPLVKEAGYWAGLTLYPTSKLNPKRAGDILELYGMDRVWANSAADWGDSDPLALTALACELRRR
GFSRQETERLLLENPETFMGQSPKFRKVSSR
>Mature_271_residues
MMAFIEPHIHMVCRTTDEYRAMAQAGCLAVGEPAFWAGYDRSSADGFRDYFVQLTECEPARAAKFGMDHYTWLCINPKEA
QDVAFARDVMKLIPEFIDRPNVLGIGEIGLNRNTSHEMTIFEEHLDLAVRLNQLVLIHTPHLEDKLKGTVMILSALKNRP
DLDPCRVLVDHCEEHTFPLVKEAGYWAGLTLYPTSKLNPKRAGDILELYGMDRVWANSAADWGDSDPLALTALACELRRR
GFSRQETERLLLENPETFMGQSPKFRKVSSR

Specific function: Unknown

COG id: COG1099

COG function: function code R; Predicted metal-dependent hydrolases with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012022 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: NA

Molecular weight: Translated: 30786; Mature: 30786

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAFIEPHIHMVCRTTDEYRAMAQAGCLAVGEPAFWAGYDRSSADGFRDYFVQLTECEPA
CCEEECCCEEEEECCCHHHHHHHHHCCEEECCCCEECCCCCCCCCHHHHHHEEHCCCCCH
RAAKFGMDHYTWLCINPKEAQDVAFARDVMKLIPEFIDRPNVLGIGEIGLNRNTSHEMTI
HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH
FEEHLDLAVRLNQLVLIHTPHLEDKLKGTVMILSALKNRPDLDPCRVLVDHCEEHTFPLV
HHHHHHHHEEECCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH
KEAGYWAGLTLYPTSKLNPKRAGDILELYGMDRVWANSAADWGDSDPLALTALACELRRR
HHCCCEEEEEEECCCCCCHHHHCCHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHC
GFSRQETERLLLENPETFMGQSPKFRKVSSR
CCCHHHHHHHHHCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MMAFIEPHIHMVCRTTDEYRAMAQAGCLAVGEPAFWAGYDRSSADGFRDYFVQLTECEPA
CCEEECCCEEEEECCCHHHHHHHHHCCEEECCCCEECCCCCCCCCHHHHHHEEHCCCCCH
RAAKFGMDHYTWLCINPKEAQDVAFARDVMKLIPEFIDRPNVLGIGEIGLNRNTSHEMTI
HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH
FEEHLDLAVRLNQLVLIHTPHLEDKLKGTVMILSALKNRPDLDPCRVLVDHCEEHTFPLV
HHHHHHHHEEECCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH
KEAGYWAGLTLYPTSKLNPKRAGDILELYGMDRVWANSAADWGDSDPLALTALACELRRR
HHCCCEEEEEEECCCCCCHHHHCCHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHC
GFSRQETERLLLENPETFMGQSPKFRKVSSR
CCCHHHHHHHHHCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]