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The map label for this gene is sdhB [H]

Identifier: 187735482

GI number: 187735482

Start: 1177646

End: 1178413

Strand: Reverse

Name: sdhB [H]

Synonym: Amuc_0984

Alternate gene names: 187735482

Gene position: 1178413-1177646 (Counterclockwise)

Preceding gene: 187735483

Following gene: 187735481

Centisome position: 44.23

GC content: 59.9

Gene sequence:

>768_bases
ATGGCTAAAACACTCAATCTCACTCTCAAGGTCTGGCGCCAGGAAAACCGGGAAGCCAAGGGCCGCATTGAGACCTATGC
CGCCAAGGACATTCCGGTGGACGCCTCCTTCCTGGAAATGCTGGACATCGTCAATGAAGGCCTGGTCAAGGAAGGCAAGG
AACCCATCCATTTTGACCACGACTGCCGGGAAGGCATCTGCGGCATGTGCTCCCTGACCATCAACGGCATTCCCCACGGG
CCGGAACGCCAGGTGACCACTTGCCAGCTTCACATGCGCAAGTTCAAGGACGGCGATACCGTCTGGATTGAACCCTTCCG
CGCGAAGGCTTTCCCAATCCTGCGGGACCTGATGGTGGACCGCTCCGCCCTGGACCGCATCATCGCCGCCGGAGGCTATA
TTGACGTGCGTACCGGTTCCGCGCCGAACGCCAACAACATCGCCGTGGAAAAAGTGAAGGCGGACGCCGCCTTTGACGCG
GCCGCCTGCATCGGCTGCGGCGCCTGCGTGGCCTCCTGTAAAAACGCCTCCGCCATGCTGTTCACCTCCGCCAAGATCGC
CCATCTCAATCTGCTGCCGCAGGGCCAGCCGGAACGTTCCAAGCGCGTCCTGGCCATGATGAAGCAAATGGAAGCGGAAG
GCTTCGGCAACTGCACGAACCAGTATGAATGTGAAGCTGCTTGCCCGAAAGGCATCAGCGTGGACAACATCGCCCGCCTC
AACCGCGACTTCATGCGAGCCAACGCCAAGGAAGGTCTCTGTTTCTAA

Upstream 100 bases:

>100_bases
CTCCACAAGGAACCGCTGACCTTCGAGAACGTGCACCTTGCCATCCGCAGCTACAAGTAAAGATAGCCAATACATTAACA
CTCAAAAGAAAGATTATAAC

Downstream 100 bases:

>100_bases
AGAAGATTCCTTCTTAAGACGCTCTGTAAAAACTCCCGGCGGCATCGGCTGTCGGGAGTTTTTTTCATTATCAGGTTTCC
TTGAACCAGGAATAAAATAT

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAKTLNLTLKVWRQENREAKGRIETYAAKDIPVDASFLEMLDIVNEGLVKEGKEPIHFDHDCREGICGMCSLTINGIPHG
PERQVTTCQLHMRKFKDGDTVWIEPFRAKAFPILRDLMVDRSALDRIIAAGGYIDVRTGSAPNANNIAVEKVKADAAFDA
AACIGCGACVASCKNASAMLFTSAKIAHLNLLPQGQPERSKRVLAMMKQMEAEGFGNCTNQYECEAACPKGISVDNIARL
NRDFMRANAKEGLCF

Sequences:

>Translated_255_residues
MAKTLNLTLKVWRQENREAKGRIETYAAKDIPVDASFLEMLDIVNEGLVKEGKEPIHFDHDCREGICGMCSLTINGIPHG
PERQVTTCQLHMRKFKDGDTVWIEPFRAKAFPILRDLMVDRSALDRIIAAGGYIDVRTGSAPNANNIAVEKVKADAAFDA
AACIGCGACVASCKNASAMLFTSAKIAHLNLLPQGQPERSKRVLAMMKQMEAEGFGNCTNQYECEAACPKGISVDNIARL
NRDFMRANAKEGLCF
>Mature_254_residues
AKTLNLTLKVWRQENREAKGRIETYAAKDIPVDASFLEMLDIVNEGLVKEGKEPIHFDHDCREGICGMCSLTINGIPHGP
ERQVTTCQLHMRKFKDGDTVWIEPFRAKAFPILRDLMVDRSALDRIIAAGGYIDVRTGSAPNANNIAVEKVKADAAFDAA
ACIGCGACVASCKNASAMLFTSAKIAHLNLLPQGQPERSKRVLAMMKQMEAEGFGNCTNQYECEAACPKGISVDNIARLN
RDFMRANAKEGLCF

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1790596, Length=243, Percent_Identity=28.3950617283951, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 27998; Mature: 27866

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS00197 2FE2S_FER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTLNLTLKVWRQENREAKGRIETYAAKDIPVDASFLEMLDIVNEGLVKEGKEPIHFDH
CCCEEEHHEEEEHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
DCREGICGMCSLTINGIPHGPERQVTTCQLHMRKFKDGDTVWIEPFRAKAFPILRDLMVD
HHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHH
RSALDRIIAAGGYIDVRTGSAPNANNIAVEKVKADAAFDAAACIGCGACVASCKNASAML
HHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEE
FTSAKIAHLNLLPQGQPERSKRVLAMMKQMEAEGFGNCTNQYECEAACPKGISVDNIARL
EECCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHH
NRDFMRANAKEGLCF
HHHHHHCCCCCCCCC
>Mature Secondary Structure 
AKTLNLTLKVWRQENREAKGRIETYAAKDIPVDASFLEMLDIVNEGLVKEGKEPIHFDH
CCEEEHHEEEEHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
DCREGICGMCSLTINGIPHGPERQVTTCQLHMRKFKDGDTVWIEPFRAKAFPILRDLMVD
HHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHH
RSALDRIIAAGGYIDVRTGSAPNANNIAVEKVKADAAFDAAACIGCGACVASCKNASAML
HHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEE
FTSAKIAHLNLLPQGQPERSKRVLAMMKQMEAEGFGNCTNQYECEAACPKGISVDNIARL
EECCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHH
NRDFMRANAKEGLCF
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]