Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is fmt
Identifier: 187735473
GI number: 187735473
Start: 1162391
End: 1163335
Strand: Reverse
Name: fmt
Synonym: Amuc_0972
Alternate gene names: 187735473
Gene position: 1163335-1162391 (Counterclockwise)
Preceding gene: 187735480
Following gene: 187735472
Centisome position: 43.67
GC content: 60.63
Gene sequence:
>945_bases ATGCGCATCGTCTTCATGGGCACAGGCGACATTGCCATTCCCGCCTTCCGCAGCCTGATCCGTCACTCGGACCTGGCAGG CCTGGTCACGCAGCCCGACCGCCCTGTCGGCAGGCATCAGGTGCTTACAGCCCCGGCCATCAAAAATATTGCCAGGGAAG CGGGCATTCCCGTGCTCCAGCCGCATTCCCTGCGCAGCCCGGATGCGCTGAGCAACCTCAGGAGACTGAATCCGGATCTG ATCGTCGTCATGGCGTACGGGCAGATCCTGAGCCAGGAAGTGATTGATATGGCGCCCATGGGCTGCATCAACGCCCATGC CTCCCTCCTGCCGCGCCACCGCGGAGCGGCCTGCATCCAGTCCGCCATCAAATCCGGCGATGCAGAAACGGGCATCACCA TCATGCACATTGTCAGGAAGCTGGATGCCGGAGACATCATCGCCCAGATCAGCACCCCCCTGGAAGGCTCGGAAACCGGA GGCACCCTGCATGACAAGCTGGCCAGGATGACACCGGATGTCCTGCTGCCCGTCATCCATTCCATTGAAAAAGGGACGGC CACGCGCATCCGCCAGCAGGAAATCCTGGCAACATACGCCCCCAAGCTCCTGCGGGCGGACGGAAAAATCGACTGGACGC GCCCCGCAGAAGAAATCGGCCGCATGATCCGGGCGTACGACCCGTGGCCCGGTACCTTCACCAACTACTGGAACCGCAAA AAACGCATCCGCAACATGAAAATTTTCCCCGGCTTTTCCATCCTCCCGGAAGCGGAGGGGAAACCGGGCCAGGTGCTCTC CGCCGGGGAACAGGGGCTTTTGATCGCCTGCGGAAGCGGAGGATTGCTGGTGACAGACGTCCAGCTTGAAGGCAGCACGC GCATGAATATCTCCCAGCTCATTGCCGGCCACCCGAATTTGAAAGATATCCATTTTGACGTATAA
Upstream 100 bases:
>100_bases GGAAAGGAACGGGAAAAAACGGCCTTTCTTCCCTATTATTCCCTTCTCAAAACCGGATTTAACATTGACCTGCGCAGGCC GTCAGGGCAAGCTTCCAGCC
Downstream 100 bases:
>100_bases ATGGCCAAGTCCTTTTCCATGGAGAGCCTGAACGCGGCCCAGAGGAAGGCCGTGCAGACCCTGCAGGGGCCCGTGCTGAT CCTGGCCGGGGCCGGAACGG
Product: methionyl-tRNA formyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQPHSLRSPDALSNLRRLNPDL IVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQSAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETG GTLHDKLARMTPDVLLPVIHSIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQLIAGHPNLKDIHFDV
Sequences:
>Translated_314_residues MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQPHSLRSPDALSNLRRLNPDL IVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQSAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETG GTLHDKLARMTPDVLLPVIHSIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQLIAGHPNLKDIHFDV >Mature_314_residues MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQPHSLRSPDALSNLRRLNPDL IVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQSAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETG GTLHDKLARMTPDVLLPVIHSIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQLIAGHPNLKDIHFDV
Specific function: Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by:(I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-
COG id: COG0223
COG function: function code J; Methionyl-tRNA formyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fmt family
Homologues:
Organism=Homo sapiens, GI21614513, Length=319, Percent_Identity=28.2131661442006, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI164663775, Length=309, Percent_Identity=28.4789644012945, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI238814322, Length=293, Percent_Identity=27.3037542662116, Blast_Score=85, Evalue=7e-17, Organism=Escherichia coli, GI1789683, Length=302, Percent_Identity=39.4039735099338, Blast_Score=219, Evalue=1e-58, Organism=Escherichia coli, GI1788589, Length=302, Percent_Identity=30.4635761589404, Blast_Score=147, Evalue=6e-37, Organism=Caenorhabditis elegans, GI133930964, Length=332, Percent_Identity=24.3975903614458, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI45550868, Length=310, Percent_Identity=28.3870967741935, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI24585660, Length=274, Percent_Identity=27.007299270073, Blast_Score=92, Evalue=6e-19, Organism=Drosophila melanogaster, GI28571984, Length=225, Percent_Identity=31.1111111111111, Blast_Score=88, Evalue=7e-18,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): FMT_AKKM8 (B2UQR9)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001877585.1 - ProteinModelPortal: B2UQR9 - SMR: B2UQR9 - GeneID: 6274178 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_0972 - HOGENOM: HBG571560 - OMA: IMQMDEG - HAMAP: MF_00182 - InterPro: IPR005794 - InterPro: IPR005793 - InterPro: IPR002376 - InterPro: IPR011034 - InterPro: IPR015518 - Gene3D: G3DSA:3.10.25.10 - Gene3D: G3DSA:3.40.50.170 - PANTHER: PTHR11138 - TIGRFAMs: TIGR00460
Pfam domain/function: PF02911 Formyl_trans_C; PF00551 Formyl_trans_N; SSF50486 FMT_C_like; SSF53328 formyl_transf
EC number: =2.1.2.9
Molecular weight: Translated: 34190; Mature: 34190
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: PS00373 GART
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQ CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCC PHSLRSPDALSNLRRLNPDLIVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQ CCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH SAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETGGTLHDKLARMTPDVLLPVIH HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHH SIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQL HHHCCCEECCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEEEEEEECCCCCCCHHHH IAGHPNLKDIHFDV HCCCCCCCCEEECC >Mature Secondary Structure MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQ CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCC PHSLRSPDALSNLRRLNPDLIVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQ CCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH SAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETGGTLHDKLARMTPDVLLPVIH HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHH SIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQL HHHCCCEECCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEEEEEEECCCCCCCHHHH IAGHPNLKDIHFDV HCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA