Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is fmt

Identifier: 187735473

GI number: 187735473

Start: 1162391

End: 1163335

Strand: Reverse

Name: fmt

Synonym: Amuc_0972

Alternate gene names: 187735473

Gene position: 1163335-1162391 (Counterclockwise)

Preceding gene: 187735480

Following gene: 187735472

Centisome position: 43.67

GC content: 60.63

Gene sequence:

>945_bases
ATGCGCATCGTCTTCATGGGCACAGGCGACATTGCCATTCCCGCCTTCCGCAGCCTGATCCGTCACTCGGACCTGGCAGG
CCTGGTCACGCAGCCCGACCGCCCTGTCGGCAGGCATCAGGTGCTTACAGCCCCGGCCATCAAAAATATTGCCAGGGAAG
CGGGCATTCCCGTGCTCCAGCCGCATTCCCTGCGCAGCCCGGATGCGCTGAGCAACCTCAGGAGACTGAATCCGGATCTG
ATCGTCGTCATGGCGTACGGGCAGATCCTGAGCCAGGAAGTGATTGATATGGCGCCCATGGGCTGCATCAACGCCCATGC
CTCCCTCCTGCCGCGCCACCGCGGAGCGGCCTGCATCCAGTCCGCCATCAAATCCGGCGATGCAGAAACGGGCATCACCA
TCATGCACATTGTCAGGAAGCTGGATGCCGGAGACATCATCGCCCAGATCAGCACCCCCCTGGAAGGCTCGGAAACCGGA
GGCACCCTGCATGACAAGCTGGCCAGGATGACACCGGATGTCCTGCTGCCCGTCATCCATTCCATTGAAAAAGGGACGGC
CACGCGCATCCGCCAGCAGGAAATCCTGGCAACATACGCCCCCAAGCTCCTGCGGGCGGACGGAAAAATCGACTGGACGC
GCCCCGCAGAAGAAATCGGCCGCATGATCCGGGCGTACGACCCGTGGCCCGGTACCTTCACCAACTACTGGAACCGCAAA
AAACGCATCCGCAACATGAAAATTTTCCCCGGCTTTTCCATCCTCCCGGAAGCGGAGGGGAAACCGGGCCAGGTGCTCTC
CGCCGGGGAACAGGGGCTTTTGATCGCCTGCGGAAGCGGAGGATTGCTGGTGACAGACGTCCAGCTTGAAGGCAGCACGC
GCATGAATATCTCCCAGCTCATTGCCGGCCACCCGAATTTGAAAGATATCCATTTTGACGTATAA

Upstream 100 bases:

>100_bases
GGAAAGGAACGGGAAAAAACGGCCTTTCTTCCCTATTATTCCCTTCTCAAAACCGGATTTAACATTGACCTGCGCAGGCC
GTCAGGGCAAGCTTCCAGCC

Downstream 100 bases:

>100_bases
ATGGCCAAGTCCTTTTCCATGGAGAGCCTGAACGCGGCCCAGAGGAAGGCCGTGCAGACCCTGCAGGGGCCCGTGCTGAT
CCTGGCCGGGGCCGGAACGG

Product: methionyl-tRNA formyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQPHSLRSPDALSNLRRLNPDL
IVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQSAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETG
GTLHDKLARMTPDVLLPVIHSIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK
KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQLIAGHPNLKDIHFDV

Sequences:

>Translated_314_residues
MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQPHSLRSPDALSNLRRLNPDL
IVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQSAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETG
GTLHDKLARMTPDVLLPVIHSIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK
KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQLIAGHPNLKDIHFDV
>Mature_314_residues
MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQPHSLRSPDALSNLRRLNPDL
IVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQSAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETG
GTLHDKLARMTPDVLLPVIHSIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK
KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQLIAGHPNLKDIHFDV

Specific function: Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by:(I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-

COG id: COG0223

COG function: function code J; Methionyl-tRNA formyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fmt family

Homologues:

Organism=Homo sapiens, GI21614513, Length=319, Percent_Identity=28.2131661442006, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI164663775, Length=309, Percent_Identity=28.4789644012945, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI238814322, Length=293, Percent_Identity=27.3037542662116, Blast_Score=85, Evalue=7e-17,
Organism=Escherichia coli, GI1789683, Length=302, Percent_Identity=39.4039735099338, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1788589, Length=302, Percent_Identity=30.4635761589404, Blast_Score=147, Evalue=6e-37,
Organism=Caenorhabditis elegans, GI133930964, Length=332, Percent_Identity=24.3975903614458, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI45550868, Length=310, Percent_Identity=28.3870967741935, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24585660, Length=274, Percent_Identity=27.007299270073, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI28571984, Length=225, Percent_Identity=31.1111111111111, Blast_Score=88, Evalue=7e-18,

Paralogues:

None

Copy number: 400 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): FMT_AKKM8 (B2UQR9)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001877585.1
- ProteinModelPortal:   B2UQR9
- SMR:   B2UQR9
- GeneID:   6274178
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_0972
- HOGENOM:   HBG571560
- OMA:   IMQMDEG
- HAMAP:   MF_00182
- InterPro:   IPR005794
- InterPro:   IPR005793
- InterPro:   IPR002376
- InterPro:   IPR011034
- InterPro:   IPR015518
- Gene3D:   G3DSA:3.10.25.10
- Gene3D:   G3DSA:3.40.50.170
- PANTHER:   PTHR11138
- TIGRFAMs:   TIGR00460

Pfam domain/function: PF02911 Formyl_trans_C; PF00551 Formyl_trans_N; SSF50486 FMT_C_like; SSF53328 formyl_transf

EC number: =2.1.2.9

Molecular weight: Translated: 34190; Mature: 34190

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00373 GART

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQ
CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCC
PHSLRSPDALSNLRRLNPDLIVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQ
CCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH
SAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETGGTLHDKLARMTPDVLLPVIH
HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHH
SIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH
KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQL
HHHCCCEECCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEEEEEEECCCCCCCHHHH
IAGHPNLKDIHFDV
HCCCCCCCCEEECC
>Mature Secondary Structure
MRIVFMGTGDIAIPAFRSLIRHSDLAGLVTQPDRPVGRHQVLTAPAIKNIAREAGIPVLQ
CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCC
PHSLRSPDALSNLRRLNPDLIVVMAYGQILSQEVIDMAPMGCINAHASLLPRHRGAACIQ
CCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH
SAIKSGDAETGITIMHIVRKLDAGDIIAQISTPLEGSETGGTLHDKLARMTPDVLLPVIH
HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHH
SIEKGTATRIRQQEILATYAPKLLRADGKIDWTRPAEEIGRMIRAYDPWPGTFTNYWNRK
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH
KRIRNMKIFPGFSILPEAEGKPGQVLSAGEQGLLIACGSGGLLVTDVQLEGSTRMNISQL
HHHCCCEECCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEEEEEEECCCCCCCHHHH
IAGHPNLKDIHFDV
HCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA