Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

Click here to switch to the map view.

The map label for this gene is nrdD [C]

Identifier: 187735364

GI number: 187735364

Start: 1027307

End: 1029403

Strand: Reverse

Name: nrdD [C]

Synonym: Amuc_0862

Alternate gene names: 187735364

Gene position: 1029403-1027307 (Counterclockwise)

Preceding gene: 187735366

Following gene: 187735363

Centisome position: 38.64

GC content: 57.46

Gene sequence:

>2097_bases
ATGGCAACAAGCATCATCAAACGTTCCGGGAAAAAGGAGCAATACCAGGGCTATAAGATTGAAGAGGCCATTAGAAAAGC
CTTCCACAGTTCCGGGACCGCCTACAACCGTTCCATCTATGAAGAGGTGGAAGCCAAGCTGAGCCATCAGGACAGTGCGC
ATGTGGAAGAGATTCAGGACATGATTGAACGCGCCCTGTTCCGTTCCGGATATTTTGACACGGCCAAGGCCTTCATCACC
TACCGTTTCCTGCACAAAATGCAGCGCGAACAGCTTGGCGGCCTTTATTCCGGCAATACCTATGTGGACTGCAAGCAGAC
GGTAGAGGAATATATCGGGCAAAGCGACTGGCGCATTGCTGCCAACTCCAATACCACGTATTCCAATGCGGGGCTCATCA
ACAACACGGCGGGCAAGGTGATCGCCAACTATTGGCTGGACCAGGTTTACTCCGCACGGGAAGGAGCCGCGCACCGGGAA
GGGGATTACCACATCCATGACCTGGATTGCCTGACCGGATACTGCGCCGGATGGAGCCTCCGCAACCTGCTCAATGAAGG
ATTCAACGGCGTGCGCAGCCGCGTGAACAGCAGGCCGCCCCGCCACTTCCGGGAAGCCCTGGGCCAGATGGCGAACTTTC
TGGGCATTCTGCAAAGCGAATGGGCCGGCGCCCAGGCCTTCAGCTCCTTTGACACCTTCCTGGCGCCCTACGTTTTTAAG
GACCAGACGGACTTCCCCCGCATCAAGAAAGACATCCGCAGTTTTGTCTACAACCTGAACGTACCCTCGCGCTGGGGGCA
ATCTCCCTTTACCAATGTCACGATCGACTGGACTGTGCCGCGCGACCTGCGGGATCAGGCCCCCTTCAGCGGAGGGGAAC
ACCTCTTTGAAGGAATAGAAGACGCGAACCTGCTCGCCCTGGCGAGGGAACGCGGGGCAAACAAGCTGACGGAACTGACC
TACAAGCATTTCCAGAAGGAAATGAACCTGATCAACAAGGCCTTTTACGAAGTTCTCACGGAAGGGGACAGCACCGGACA
GCCCTTCACCTTCCCCATCCCCACCGTCAACATCACGGAAGACTTTGACTGGGAAGGGGAAAACGTGCCTCTCCTGTTTG
AAAACGCCGCCAAAATCGGTTCCTCTTACTTCCAGAACTTCATCGGCAGCCAGTACACCGTCAATGAACACGGGGAACGC
GTGCCTGACGAACGGGCCTACAAGCCGGATGCCGTGCGTTCCATGTGCTGCCGCCTCCAGCTGGACCTGCGGGAACTGCT
CAAACGCGGCGGCGGTCTCTTCGGCTCCGCGGAAATGACCGGCTCCATCGGCGTAGTGACCATCAACCTGGCCCGGCTGG
GCTACCTGTTCAAGCAAAACCGGGAGGCCCTGTTCGCCAGGCTGGGAGAACTGCTGGACCTGGCCAAATCCTGCCTGGAA
AAGAAAAGGGCCTTCGTTCAGGAAATGTATGACCGCGGCCTGTACCCCTACACCAAACGCTACCTGCCCACCTTCCGCAA
CCATTTCTCCACCATCGGCGTCAACGGCATGAACGAGCTGTTGCGCAATTTCTCCAACGATACGATGGACATTACCTCTG
AAGAAGGCAGGGCCTTTGCTGAAGAGATCCTGGAATTCATCCGCTTGCGCATGCAGGAGTACCAGGAGGAAACCGGCAAC
CTGTACAACCTGGAAGCCACGCCCGCGGAAGGCACCACGCACCGCTTCGCCCGCGAAGACCAGAAACGCTATCCTGACAT
CATCCAGGCCGGCCCCGTGGGGCAGCGTTATTACACGAACAGCTCCCAGCTTCCCGTGGACCACACAAGTGATCTGTTCC
GGGCGCTCCAGCTTCAGGATGAACTTCAATGCTGCTACACGGGAGGAACCGTCTTCCACATGTACATGAACGAAGCCATC
AGCTCCCCGGAAGCCTGCCGGGACATTGTCCGCAAAGTGCTGACCCGCTTCCGCATGCCGTACCTCACCGTCACCCCGCT
CTTTTCCGTTTGCGAGAAGCACGGCTATCTGCGCGGGGAGCACGAATACTGCCCCTTCTGCGATGAGGAGCTGCTCCACA
TCCACAGGCATGAATAA

Upstream 100 bases:

>100_bases
GAATGCACGCATGCGGTTGGCCCCTGCCTATGGTTTTTCCAGGCTTTTGCCCAGGCTCGCGGATGAGCGGTCACCACCCT
TTCCAAGCGAGACACCCATC

Downstream 100 bases:

>100_bases
AATCCCTTTTCCAATAGGCTCCCGACTTCAAACCCAACCATTAATACGACAATGACCAAACAGGAAATATTAAGCAAATA
CGCACAGGACCGGACCCGCT

Product: anaerobic ribonucleoside triphosphate reductase

Products: ribonucleoside triphosphate; thioredoxin

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 697

Protein sequence:

>698_residues
MATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQDMIERALFRSGYFDTAKAFIT
YRFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIAANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHRE
GDYHIHDLDCLTGYCAGWSLRNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFK
DQTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIEDANLLALARERGANKLTELT
YKHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITEDFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGER
VPDERAYKPDAVRSMCCRLQLDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLE
KKRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFAEEILEFIRLRMQEYQEETGN
LYNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTNSSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAI
SSPEACRDIVRKVLTRFRMPYLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE

Sequences:

>Translated_698_residues
MATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQDMIERALFRSGYFDTAKAFIT
YRFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIAANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHRE
GDYHIHDLDCLTGYCAGWSLRNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFK
DQTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIEDANLLALARERGANKLTELT
YKHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITEDFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGER
VPDERAYKPDAVRSMCCRLQLDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLE
KKRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFAEEILEFIRLRMQEYQEETGN
LYNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTNSSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAI
SSPEACRDIVRKVLTRFRMPYLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE
>Mature_697_residues
ATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQDMIERALFRSGYFDTAKAFITY
RFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIAANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHREG
DYHIHDLDCLTGYCAGWSLRNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFKD
QTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIEDANLLALARERGANKLTELTY
KHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITEDFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGERV
PDERAYKPDAVRSMCCRLQLDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLEK
KRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFAEEILEFIRLRMQEYQEETGNL
YNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTNSSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAIS
SPEACRDIVRKVLTRFRMPYLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DOD-type homing endonuclease domains [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=247, Percent_Identity=23.8866396761134, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR007869
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF05204 Hom_end [H]

EC number: 1.17.4.2

Molecular weight: Translated: 80198; Mature: 80067

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS51161 ATP_CONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQD
CCCHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
MIERALFRSGYFDTAKAFITYRFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCEEECHHHHHHHHCCCCCCEEE
ANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHREGDYHIHDLDCLTGYCAGWSL
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHCCHHH
RNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHCC
DQTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIE
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHCCCCCCCHHHHHCCC
DANLLALARERGANKLTELTYKHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITE
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEECCC
DFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGERVPDERAYKPDAVRSMCCRLQ
CCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH
LDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLE
HHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHH
EEILEFIRLRMQEYQEETGNLYNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTN
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEECC
SSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAISSPEACRDIVRKVLTRFRMP
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
YLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE
CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
ATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQD
CCHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
MIERALFRSGYFDTAKAFITYRFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCEEECHHHHHHHHCCCCCCEEE
ANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHREGDYHIHDLDCLTGYCAGWSL
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHCCHHH
RNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHCC
DQTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIE
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHCCCCCCCHHHHHCCC
DANLLALARERGANKLTELTYKHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITE
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEECCC
DFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGERVPDERAYKPDAVRSMCCRLQ
CCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH
LDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLE
HHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHH
EEILEFIRLRMQEYQEETGNLYNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTN
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEECC
SSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAISSPEACRDIVRKVLTRFRMP
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
YLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE
CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Ca2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 2'-deoxyribonucleoside triphosphate; thioredoxin disulfide; H2O

Specific reaction: 2'-deoxyribonucleoside triphosphate + thioredoxin disulfide + H2O = ribonucleoside triphosphate + thioredoxin

General reaction: Redox reaction [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]