Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is nrdD [C]
Identifier: 187735364
GI number: 187735364
Start: 1027307
End: 1029403
Strand: Reverse
Name: nrdD [C]
Synonym: Amuc_0862
Alternate gene names: 187735364
Gene position: 1029403-1027307 (Counterclockwise)
Preceding gene: 187735366
Following gene: 187735363
Centisome position: 38.64
GC content: 57.46
Gene sequence:
>2097_bases ATGGCAACAAGCATCATCAAACGTTCCGGGAAAAAGGAGCAATACCAGGGCTATAAGATTGAAGAGGCCATTAGAAAAGC CTTCCACAGTTCCGGGACCGCCTACAACCGTTCCATCTATGAAGAGGTGGAAGCCAAGCTGAGCCATCAGGACAGTGCGC ATGTGGAAGAGATTCAGGACATGATTGAACGCGCCCTGTTCCGTTCCGGATATTTTGACACGGCCAAGGCCTTCATCACC TACCGTTTCCTGCACAAAATGCAGCGCGAACAGCTTGGCGGCCTTTATTCCGGCAATACCTATGTGGACTGCAAGCAGAC GGTAGAGGAATATATCGGGCAAAGCGACTGGCGCATTGCTGCCAACTCCAATACCACGTATTCCAATGCGGGGCTCATCA ACAACACGGCGGGCAAGGTGATCGCCAACTATTGGCTGGACCAGGTTTACTCCGCACGGGAAGGAGCCGCGCACCGGGAA GGGGATTACCACATCCATGACCTGGATTGCCTGACCGGATACTGCGCCGGATGGAGCCTCCGCAACCTGCTCAATGAAGG ATTCAACGGCGTGCGCAGCCGCGTGAACAGCAGGCCGCCCCGCCACTTCCGGGAAGCCCTGGGCCAGATGGCGAACTTTC TGGGCATTCTGCAAAGCGAATGGGCCGGCGCCCAGGCCTTCAGCTCCTTTGACACCTTCCTGGCGCCCTACGTTTTTAAG GACCAGACGGACTTCCCCCGCATCAAGAAAGACATCCGCAGTTTTGTCTACAACCTGAACGTACCCTCGCGCTGGGGGCA ATCTCCCTTTACCAATGTCACGATCGACTGGACTGTGCCGCGCGACCTGCGGGATCAGGCCCCCTTCAGCGGAGGGGAAC ACCTCTTTGAAGGAATAGAAGACGCGAACCTGCTCGCCCTGGCGAGGGAACGCGGGGCAAACAAGCTGACGGAACTGACC TACAAGCATTTCCAGAAGGAAATGAACCTGATCAACAAGGCCTTTTACGAAGTTCTCACGGAAGGGGACAGCACCGGACA GCCCTTCACCTTCCCCATCCCCACCGTCAACATCACGGAAGACTTTGACTGGGAAGGGGAAAACGTGCCTCTCCTGTTTG AAAACGCCGCCAAAATCGGTTCCTCTTACTTCCAGAACTTCATCGGCAGCCAGTACACCGTCAATGAACACGGGGAACGC GTGCCTGACGAACGGGCCTACAAGCCGGATGCCGTGCGTTCCATGTGCTGCCGCCTCCAGCTGGACCTGCGGGAACTGCT CAAACGCGGCGGCGGTCTCTTCGGCTCCGCGGAAATGACCGGCTCCATCGGCGTAGTGACCATCAACCTGGCCCGGCTGG GCTACCTGTTCAAGCAAAACCGGGAGGCCCTGTTCGCCAGGCTGGGAGAACTGCTGGACCTGGCCAAATCCTGCCTGGAA AAGAAAAGGGCCTTCGTTCAGGAAATGTATGACCGCGGCCTGTACCCCTACACCAAACGCTACCTGCCCACCTTCCGCAA CCATTTCTCCACCATCGGCGTCAACGGCATGAACGAGCTGTTGCGCAATTTCTCCAACGATACGATGGACATTACCTCTG AAGAAGGCAGGGCCTTTGCTGAAGAGATCCTGGAATTCATCCGCTTGCGCATGCAGGAGTACCAGGAGGAAACCGGCAAC CTGTACAACCTGGAAGCCACGCCCGCGGAAGGCACCACGCACCGCTTCGCCCGCGAAGACCAGAAACGCTATCCTGACAT CATCCAGGCCGGCCCCGTGGGGCAGCGTTATTACACGAACAGCTCCCAGCTTCCCGTGGACCACACAAGTGATCTGTTCC GGGCGCTCCAGCTTCAGGATGAACTTCAATGCTGCTACACGGGAGGAACCGTCTTCCACATGTACATGAACGAAGCCATC AGCTCCCCGGAAGCCTGCCGGGACATTGTCCGCAAAGTGCTGACCCGCTTCCGCATGCCGTACCTCACCGTCACCCCGCT CTTTTCCGTTTGCGAGAAGCACGGCTATCTGCGCGGGGAGCACGAATACTGCCCCTTCTGCGATGAGGAGCTGCTCCACA TCCACAGGCATGAATAA
Upstream 100 bases:
>100_bases GAATGCACGCATGCGGTTGGCCCCTGCCTATGGTTTTTCCAGGCTTTTGCCCAGGCTCGCGGATGAGCGGTCACCACCCT TTCCAAGCGAGACACCCATC
Downstream 100 bases:
>100_bases AATCCCTTTTCCAATAGGCTCCCGACTTCAAACCCAACCATTAATACGACAATGACCAAACAGGAAATATTAAGCAAATA CGCACAGGACCGGACCCGCT
Product: anaerobic ribonucleoside triphosphate reductase
Products: ribonucleoside triphosphate; thioredoxin
Alternate protein names: NA
Number of amino acids: Translated: 698; Mature: 697
Protein sequence:
>698_residues MATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQDMIERALFRSGYFDTAKAFIT YRFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIAANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHRE GDYHIHDLDCLTGYCAGWSLRNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFK DQTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIEDANLLALARERGANKLTELT YKHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITEDFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGER VPDERAYKPDAVRSMCCRLQLDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLE KKRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFAEEILEFIRLRMQEYQEETGN LYNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTNSSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAI SSPEACRDIVRKVLTRFRMPYLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE
Sequences:
>Translated_698_residues MATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQDMIERALFRSGYFDTAKAFIT YRFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIAANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHRE GDYHIHDLDCLTGYCAGWSLRNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFK DQTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIEDANLLALARERGANKLTELT YKHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITEDFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGER VPDERAYKPDAVRSMCCRLQLDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLE KKRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFAEEILEFIRLRMQEYQEETGN LYNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTNSSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAI SSPEACRDIVRKVLTRFRMPYLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE >Mature_697_residues ATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQDMIERALFRSGYFDTAKAFITY RFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIAANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHREG DYHIHDLDCLTGYCAGWSLRNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFKD QTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIEDANLLALARERGANKLTELTY KHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITEDFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGERV PDERAYKPDAVRSMCCRLQLDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLEK KRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFAEEILEFIRLRMQEYQEETGNL YNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTNSSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAIS SPEACRDIVRKVLTRFRMPYLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DOD-type homing endonuclease domains [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=247, Percent_Identity=23.8866396761134, Blast_Score=73, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR003586 - InterPro: IPR003587 - InterPro: IPR007869 - InterPro: IPR006142 - InterPro: IPR004042 - InterPro: IPR006141 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF05204 Hom_end [H]
EC number: 1.17.4.2
Molecular weight: Translated: 80198; Mature: 80067
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQD CCCHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH MIERALFRSGYFDTAKAFITYRFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIA HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCEEECHHHHHHHHCCCCCCEEE ANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHREGDYHIHDLDCLTGYCAGWSL ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHCCHHH RNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHCC DQTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIE CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHCCCCCCCHHHHHCCC DANLLALARERGANKLTELTYKHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITE CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEECCC DFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGERVPDERAYKPDAVRSMCCRLQ CCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH LDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLE HHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHH EEILEFIRLRMQEYQEETGNLYNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTN HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEECC SSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAISSPEACRDIVRKVLTRFRMP CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC YLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC >Mature Secondary Structure ATSIIKRSGKKEQYQGYKIEEAIRKAFHSSGTAYNRSIYEEVEAKLSHQDSAHVEEIQD CCHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH MIERALFRSGYFDTAKAFITYRFLHKMQREQLGGLYSGNTYVDCKQTVEEYIGQSDWRIA HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCEEECHHHHHHHHCCCCCCEEE ANSNTTYSNAGLINNTAGKVIANYWLDQVYSAREGAAHREGDYHIHDLDCLTGYCAGWSL ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHCCHHH RNLLNEGFNGVRSRVNSRPPRHFREALGQMANFLGILQSEWAGAQAFSSFDTFLAPYVFK HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHCC DQTDFPRIKKDIRSFVYNLNVPSRWGQSPFTNVTIDWTVPRDLRDQAPFSGGEHLFEGIE CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHCCCCCCCHHHHHCCC DANLLALARERGANKLTELTYKHFQKEMNLINKAFYEVLTEGDSTGQPFTFPIPTVNITE CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEECCC DFDWEGENVPLLFENAAKIGSSYFQNFIGSQYTVNEHGERVPDERAYKPDAVRSMCCRLQ CCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH LDLRELLKRGGGLFGSAEMTGSIGVVTINLARLGYLFKQNREALFARLGELLDLAKSCLE HHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKRAFVQEMYDRGLYPYTKRYLPTFRNHFSTIGVNGMNELLRNFSNDTMDITSEEGRAFA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHH EEILEFIRLRMQEYQEETGNLYNLEATPAEGTTHRFAREDQKRYPDIIQAGPVGQRYYTN HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEECC SSQLPVDHTSDLFRALQLQDELQCCYTGGTVFHMYMNEAISSPEACRDIVRKVLTRFRMP CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC YLTVTPLFSVCEKHGYLRGEHEYCPFCDEELLHIHRHE CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Ca2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2'-deoxyribonucleoside triphosphate; thioredoxin disulfide; H2O
Specific reaction: 2'-deoxyribonucleoside triphosphate + thioredoxin disulfide + H2O = ribonucleoside triphosphate + thioredoxin
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]