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The map label for this gene is ybdM [H]

Identifier: 187735285

GI number: 187735285

Start: 918224

End: 918739

Strand: Reverse

Name: ybdM [H]

Synonym: Amuc_0782

Alternate gene names: 187735285

Gene position: 918739-918224 (Counterclockwise)

Preceding gene: 187735286

Following gene: 187735284

Centisome position: 34.49

GC content: 53.29

Gene sequence:

>516_bases
ATGAAAACCTCCTATCAATCCCCCGTTTACAAAATCCGGCGCGTTCCCCTGGACCAGATACGTTCCAATGCCTATAACCC
GAACAGCGTAGCTCCCCCCGAAATGAAGCTGCTCTACCAGAGCATCAAGGAGGACGGTTATACGATGCCTATCGTTTGTT
ATAAGCTGGAGGACGGGACCTATGAAATCGTGGACGGGTTCCACCGCTGCCAGATCATGAAGACTTACCGCGATATTTAC
GAACGGGAGGGTGGCATGATGCCGGTGGCCGTAATCGACAAGCCTCTTGGAAACCGCATGGCTTCCACCATCAGGCACAA
CCGTGCCCGGGGATCTCATAATATCGCCCTCATGACCAATATTATCCAGGAGTTGACGGAGGCAGGCATGTCGGATGCGT
GGATACTCAAAAATCTGGGGATGGATGCGGAAGAATTGTTGCGCCTCAAGCAGCTCAGCGGGATTGCCTCCCTGTTCCGG
GACGAGGAATTCAGCCGGGCATGGGAATCGAAATAA

Upstream 100 bases:

>100_bases
TCATGAAGAATGATTACTTTTGCAAGTACGCCGGGTTCGGTCCAACCAAGGGAGCGATTGCCCGGCGCCGGGCCGCCGTC
AATAAATACCGCAATATTTT

Downstream 100 bases:

>100_bases
TATCAACCCGGAATCCATGAATAAATATGTCGCTCAACTGCTGGAAGTCATTCAGAAGAAAACAGGCTGTGACACGAGCG
GCGCCGTGCGCTGGCTGGCG

Product: ParB domain protein nuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKTSYQSPVYKIRRVPLDQIRSNAYNPNSVAPPEMKLLYQSIKEDGYTMPIVCYKLEDGTYEIVDGFHRCQIMKTYRDIY
EREGGMMPVAVIDKPLGNRMASTIRHNRARGSHNIALMTNIIQELTEAGMSDAWILKNLGMDAEELLRLKQLSGIASLFR
DEEFSRAWESK

Sequences:

>Translated_171_residues
MKTSYQSPVYKIRRVPLDQIRSNAYNPNSVAPPEMKLLYQSIKEDGYTMPIVCYKLEDGTYEIVDGFHRCQIMKTYRDIY
EREGGMMPVAVIDKPLGNRMASTIRHNRARGSHNIALMTNIIQELTEAGMSDAWILKNLGMDAEELLRLKQLSGIASLFR
DEEFSRAWESK
>Mature_171_residues
MKTSYQSPVYKIRRVPLDQIRSNAYNPNSVAPPEMKLLYQSIKEDGYTMPIVCYKLEDGTYEIVDGFHRCQIMKTYRDIY
EREGGMMPVAVIDKPLGNRMASTIRHNRARGSHNIALMTNIIQELTEAGMSDAWILKNLGMDAEELLRLKQLSGIASLFR
DEEFSRAWESK

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=166, Percent_Identity=47.5903614457831, Blast_Score=158, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 19683; Mature: 19683

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSYQSPVYKIRRVPLDQIRSNAYNPNSVAPPEMKLLYQSIKEDGYTMPIVCYKLEDGT
CCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCC
YEIVDGFHRCQIMKTYRDIYEREGGMMPVAVIDKPLGNRMASTIRHNRARGSHNIALMTN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
IIQELTEAGMSDAWILKNLGMDAEELLRLKQLSGIASLFRDEEFSRAWESK
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTSYQSPVYKIRRVPLDQIRSNAYNPNSVAPPEMKLLYQSIKEDGYTMPIVCYKLEDGT
CCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCC
YEIVDGFHRCQIMKTYRDIYEREGGMMPVAVIDKPLGNRMASTIRHNRARGSHNIALMTN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
IIQELTEAGMSDAWILKNLGMDAEELLRLKQLSGIASLFRDEEFSRAWESK
HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]