Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is capM [H]
Identifier: 187735264
GI number: 187735264
Start: 893181
End: 894455
Strand: Direct
Name: capM [H]
Synonym: Amuc_0759
Alternate gene names: 187735264
Gene position: 893181-894455 (Clockwise)
Preceding gene: 187735263
Following gene: 187735265
Centisome position: 33.53
GC content: 59.22
Gene sequence:
>1275_bases GTGGCTTCTCCTCAATGCCGAACAATATTTCAAGTCTCCCATAGCGTCTCGGCCAGCTCCGCCCCTTACCGGTTGAGCGA CGCTCTGAACCGGCATATTCCCGGCCTAAAATCCACCCTGCTGCTCCGGAGGCGCAAAGAAATTGACGGCCTGGAAATCC ACAGGACACCCGCCAGAAGGGCTACGGACGCCTTGCGCCGCCATCTGGCCCATGGATTTGACATTCTGCTGCCGGAAAGA AGAAAAGACCTGCCTTTCTCCCTGAATGTGCTGGGCATGGGATTTGACACGGCCCAAATGGAAAAAGCCGATGTAGTGCA TCTGCACTGGATAGGCGGCAGAACCGTGGATTTCTCGCAGCTGTGCCATATCCGCCGTCCATTGGTCTATACCCTGCACG ACATGTTTGCCTGCACCGCGGGATGCCACTGCACCATGGACTGCGGCCTGTTCCAGGACGAATGCCGCGGCAACTGCCCC CAGCTTGGCGCTCCCCGCCTCTTCCGCAACATTCCAGCGTGGCTGTTTTCCCGCAAACGCCGCGCCTTCGGCCGCATCCC GTCCCTTACCCTCGTAACTCCCTCCCTCTGGTTAAAAAGGGAAGTGGAAAGAAGCTGCATGTTCCCTGGAAGAAAAATCG TACAGATTTACAATCCTGTGGACACGGACCTTTTCCGTCCGGCGGAAGACCGGAATGCCATCCGGGCCGGCCTGGGCATC CCGCCCGGAGCGTTCGTCATCGCCTGCGGCGCAACCGGCCTGTTCAATCCGGTCAAAGGCGGCCATTTCATCCCCCTGGT GCTGGAGGAACTATACCGGCGCGGGCACCGGAACCTTCATCTCCTGCTCTTCGGCAACCAGGAAAAAAGCGTGGACTACC CCTTCCCCAGCACAAACGCCGGATTCATTACGGACATGAACAAGCTGGCCGGGCTTTACAGCGCGGCGGACATTTTCCTG AACCCCACGCTTCAGGATGTCCTTTCCAACGTAGCGCTGGAATCCATGGCCTGCAAAACCCCTTCCGTTACCTTCCGGAC GGGAGGAGTTCCGGAAGCGGTTCTGGACGGAAGGACGGGGCTGGTCGCTCAGCAGGGGGACCTGAACCAAATGGTCGCCC ACTGCGAACGGCTCATCCAGGACGGAAAACTCCTGCAAACCCTGGCGGAGGAAGGCCGTCGGCACGCGGAACAAACATTC TCCTACCCCGTCATTGCCGCACGGCACGCCGCCCTGTATGAGGAAACGTTCCGGGAATACCGTTACGAAGAGTGA
Upstream 100 bases:
>100_bases CCGCAGTTCATGGAATACTGGCAGCCTAGATTTCCCCAAAACGTTTTTCTTTCAGATTTGTAGGCTTGACGGCGGATTCC TAATCCTCATACTTTCCTAT
Downstream 100 bases:
>100_bases AAACGGCCGGCGTTCAACCGCCGGACTGCCTGTTCCAGCACATCCGGGCGCATTTTCCTTTGTCATTGACAAGAAAAAGA CGCCTCATACACTCTGCACC
Product: glycosyl transferase group 1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MASPQCRTIFQVSHSVSASSAPYRLSDALNRHIPGLKSTLLLRRRKEIDGLEIHRTPARRATDALRRHLAHGFDILLPER RKDLPFSLNVLGMGFDTAQMEKADVVHLHWIGGRTVDFSQLCHIRRPLVYTLHDMFACTAGCHCTMDCGLFQDECRGNCP QLGAPRLFRNIPAWLFSRKRRAFGRIPSLTLVTPSLWLKREVERSCMFPGRKIVQIYNPVDTDLFRPAEDRNAIRAGLGI PPGAFVIACGATGLFNPVKGGHFIPLVLEELYRRGHRNLHLLLFGNQEKSVDYPFPSTNAGFITDMNKLAGLYSAADIFL NPTLQDVLSNVALESMACKTPSVTFRTGGVPEAVLDGRTGLVAQQGDLNQMVAHCERLIQDGKLLQTLAEEGRRHAEQTF SYPVIAARHAALYEETFREYRYEE
Sequences:
>Translated_424_residues MASPQCRTIFQVSHSVSASSAPYRLSDALNRHIPGLKSTLLLRRRKEIDGLEIHRTPARRATDALRRHLAHGFDILLPER RKDLPFSLNVLGMGFDTAQMEKADVVHLHWIGGRTVDFSQLCHIRRPLVYTLHDMFACTAGCHCTMDCGLFQDECRGNCP QLGAPRLFRNIPAWLFSRKRRAFGRIPSLTLVTPSLWLKREVERSCMFPGRKIVQIYNPVDTDLFRPAEDRNAIRAGLGI PPGAFVIACGATGLFNPVKGGHFIPLVLEELYRRGHRNLHLLLFGNQEKSVDYPFPSTNAGFITDMNKLAGLYSAADIFL NPTLQDVLSNVALESMACKTPSVTFRTGGVPEAVLDGRTGLVAQQGDLNQMVAHCERLIQDGKLLQTLAEEGRRHAEQTF SYPVIAARHAALYEETFREYRYEE >Mature_423_residues ASPQCRTIFQVSHSVSASSAPYRLSDALNRHIPGLKSTLLLRRRKEIDGLEIHRTPARRATDALRRHLAHGFDILLPERR KDLPFSLNVLGMGFDTAQMEKADVVHLHWIGGRTVDFSQLCHIRRPLVYTLHDMFACTAGCHCTMDCGLFQDECRGNCPQ LGAPRLFRNIPAWLFSRKRRAFGRIPSLTLVTPSLWLKREVERSCMFPGRKIVQIYNPVDTDLFRPAEDRNAIRAGLGIP PGAFVIACGATGLFNPVKGGHFIPLVLEELYRRGHRNLHLLLFGNQEKSVDYPFPSTNAGFITDMNKLAGLYSAADIFLN PTLQDVLSNVALESMACKTPSVTFRTGGVPEAVLDGRTGLVAQQGDLNQMVAHCERLIQDGKLLQTLAEEGRRHAEQTFS YPVIAARHAALYEETFREYRYEE
Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: NA
Molecular weight: Translated: 47619; Mature: 47488
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASPQCRTIFQVSHSVSASSAPYRLSDALNRHIPGLKSTLLLRRRKEIDGLEIHRTPARR CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCHHH ATDALRRHLAHGFDILLPERRKDLPFSLNVLGMGFDTAQMEKADVVHLHWIGGRTVDFSQ HHHHHHHHHHCCCEEECCCCCCCCCEEEEEEECCCCHHHCCCCCEEEEEECCCCCCCHHH LCHIRRPLVYTLHDMFACTAGCHCTMDCGLFQDECRGNCPQLGAPRLFRNIPAWLFSRKR HHHHHCCHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHCHHHHHHHHH RAFGRIPSLTLVTPSLWLKREVERSCMFPGRKIVQIYNPVDTDLFRPAEDRNAIRAGLGI HHHCCCCCEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHCCCC PPGAFVIACGATGLFNPVKGGHFIPLVLEELYRRGHRNLHLLLFGNQEKSVDYPFPSTNA CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC GFITDMNKLAGLYSAADIFLNPTLQDVLSNVALESMACKTPSVTFRTGGVPEAVLDGRTG CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCCC LVAQQGDLNQMVAHCERLIQDGKLLQTLAEEGRRHAEQTFSYPVIAARHAALYEETFREY EEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH RYEE CCCC >Mature Secondary Structure ASPQCRTIFQVSHSVSASSAPYRLSDALNRHIPGLKSTLLLRRRKEIDGLEIHRTPARR CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCHHH ATDALRRHLAHGFDILLPERRKDLPFSLNVLGMGFDTAQMEKADVVHLHWIGGRTVDFSQ HHHHHHHHHHCCCEEECCCCCCCCCEEEEEEECCCCHHHCCCCCEEEEEECCCCCCCHHH LCHIRRPLVYTLHDMFACTAGCHCTMDCGLFQDECRGNCPQLGAPRLFRNIPAWLFSRKR HHHHHCCHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHCHHHHHHHHH RAFGRIPSLTLVTPSLWLKREVERSCMFPGRKIVQIYNPVDTDLFRPAEDRNAIRAGLGI HHHCCCCCEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHCCCC PPGAFVIACGATGLFNPVKGGHFIPLVLEELYRRGHRNLHLLLFGNQEKSVDYPFPSTNA CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC GFITDMNKLAGLYSAADIFLNPTLQDVLSNVALESMACKTPSVTFRTGGVPEAVLDGRTG CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCCCC LVAQQGDLNQMVAHCERLIQDGKLLQTLAEEGRRHAEQTFSYPVIAARHAALYEETFREY EEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH RYEE CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7961465 [H]