Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is epsJ [H]
Identifier: 187735262
GI number: 187735262
Start: 890740
End: 891894
Strand: Direct
Name: epsJ [H]
Synonym: Amuc_0757
Alternate gene names: 187735262
Gene position: 890740-891894 (Clockwise)
Preceding gene: 187735257
Following gene: 187735263
Centisome position: 33.43
GC content: 54.72
Gene sequence:
>1155_bases ATGATCCCCGATGTTTCCATCATTGTTCCCTGCTACAATGTAGCCGCTTACGTGGACAGCTGCCTGGAGAGCCTGGTACG CCAGACTCTCCGGAACATAGAAATTATCTGCATCAATGACGGCTCCACGGATGAGACCTGGACACATCTGCTGCGCTGGA AAGAAAAGGACAGCAGAATCATCCTTCTGAACCAGCGGAACGCGGGCGTCTCCGCAGCAAGGAATGCAGGGCTGGATGCC GCCCGCGGCCTTTATGTCGGTTTTGCGGATCCGGACGACTACATGGATCCGGAAATGTATTCCCGCCTTTTTTCGGCGGC TCTGGAATATGACGCAGACATCGTGGAATGCGGCAACCATGTTTTTGAAGACTCGTCAGACCGGATTATCGAAGCCAAAA GAAGATCACCCTCCCGGCATTTTGAAGAGAACGCCTCTCCGGCCAGCTTCTTCCGGGATTCCATCTGGGGGAAAATGGAT ATCTGCGTGTGGAGCAAACTGTTCCGGAAAAGCATGCTGGACGCCCACCGCCTCCGCTTCAACGTACATCTGAAATCCGG CGCGGAGGATGAAACCTTCCGGCTGATGGCCGTTCCCCATGCCTCCCGTCTCCTGTTCATTCCCGACTGCCTGTATTACT ACCGCCTTATGCGCAACGGCTCCCTCTCCCGCCGCTGCAACGTTCCCACCTACTCCAAATGCGTGCAGGAATTCCAGCGG CTGCTGTACATTGTGGACTACTGGCAGAAACAAGGATGGCAGAATGAAGGCCTGTTCGCTTACGGCGTCCGGAAAATCAG GCCTTTTTTTGTTTCCAAGCATCCCCTTTTCCATCAGATGACCGCTGTCCAGCAACGTTCCGCGCTGGACTGGTGGAGCC TGTTCTATCAGAAGGCGGAAGGAAAACGTTTCCTCTCCGCTCTATCGGGACGGGACAGGCAACTGGCGGACCTGTTGAAC TCGGCGGAACCGGTCCCCAACGGCTGGGGGCGCATTCTGCTGGCAGCCTGCTCCCTGCTTCCCGGACAAAAAGGACGTTA TTACTCCTGCAAAAAAATGCTTGCGGAACATTTTTCCCAAATCTGCCCCAATGAGTTTCAAAAAGAAAACGCTTCTCTGG AAGAGCCGTTTGACACATCGCCGCCTTCCCTGTAA
Upstream 100 bases:
>100_bases CTTTTCATACTGGCAACGTTAAAAAATTTCGGTAAGACCTGTCTTGCAAAAATTATCATTGACCACGGATTGTAAATCCG TTACACACATTCCCACCCCT
Downstream 100 bases:
>100_bases ATTGCCTTATCCTCCCATTCCGGATCAATGAACCGTTTTCTCTCATTTGCAGACTCCCGCATGTCGGCCGCCCTGGAGCG GCTGGGCAGGCAGGCGGAAG
Product: glycosyl transferase family 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MIPDVSIIVPCYNVAAYVDSCLESLVRQTLRNIEIICINDGSTDETWTHLLRWKEKDSRIILLNQRNAGVSAARNAGLDA ARGLYVGFADPDDYMDPEMYSRLFSAALEYDADIVECGNHVFEDSSDRIIEAKRRSPSRHFEENASPASFFRDSIWGKMD ICVWSKLFRKSMLDAHRLRFNVHLKSGAEDETFRLMAVPHASRLLFIPDCLYYYRLMRNGSLSRRCNVPTYSKCVQEFQR LLYIVDYWQKQGWQNEGLFAYGVRKIRPFFVSKHPLFHQMTAVQQRSALDWWSLFYQKAEGKRFLSALSGRDRQLADLLN SAEPVPNGWGRILLAACSLLPGQKGRYYSCKKMLAEHFSQICPNEFQKENASLEEPFDTSPPSL
Sequences:
>Translated_384_residues MIPDVSIIVPCYNVAAYVDSCLESLVRQTLRNIEIICINDGSTDETWTHLLRWKEKDSRIILLNQRNAGVSAARNAGLDA ARGLYVGFADPDDYMDPEMYSRLFSAALEYDADIVECGNHVFEDSSDRIIEAKRRSPSRHFEENASPASFFRDSIWGKMD ICVWSKLFRKSMLDAHRLRFNVHLKSGAEDETFRLMAVPHASRLLFIPDCLYYYRLMRNGSLSRRCNVPTYSKCVQEFQR LLYIVDYWQKQGWQNEGLFAYGVRKIRPFFVSKHPLFHQMTAVQQRSALDWWSLFYQKAEGKRFLSALSGRDRQLADLLN SAEPVPNGWGRILLAACSLLPGQKGRYYSCKKMLAEHFSQICPNEFQKENASLEEPFDTSPPSL >Mature_384_residues MIPDVSIIVPCYNVAAYVDSCLESLVRQTLRNIEIICINDGSTDETWTHLLRWKEKDSRIILLNQRNAGVSAARNAGLDA ARGLYVGFADPDDYMDPEMYSRLFSAALEYDADIVECGNHVFEDSSDRIIEAKRRSPSRHFEENASPASFFRDSIWGKMD ICVWSKLFRKSMLDAHRLRFNVHLKSGAEDETFRLMAVPHASRLLFIPDCLYYYRLMRNGSLSRRCNVPTYSKCVQEFQR LLYIVDYWQKQGWQNEGLFAYGVRKIRPFFVSKHPLFHQMTAVQQRSALDWWSLFYQKAEGKRFLSALSGRDRQLADLLN SAEPVPNGWGRILLAACSLLPGQKGRYYSCKKMLAEHFSQICPNEFQKENASLEEPFDTSPPSL
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790044, Length=228, Percent_Identity=31.5789473684211, Blast_Score=103, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 44293; Mature: 44293
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPDVSIIVPCYNVAAYVDSCLESLVRQTLRNIEIICINDGSTDETWTHLLRWKEKDSRI CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCCEE ILLNQRNAGVSAARNAGLDAARGLYVGFADPDDYMDPEMYSRLFSAALEYDADIVECGNH EEEECCCCCCHHHHHCCCHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCH VFEDSSDRIIEAKRRSPSRHFEENASPASFFRDSIWGKMDICVWSKLFRKSMLDAHRLRF HHCCCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEE NVHLKSGAEDETFRLMAVPHASRLLFIPDCLYYYRLMRNGSLSRRCNVPTYSKCVQEFQR EEEECCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH LLYIVDYWQKQGWQNEGLFAYGVRKIRPFFVSKHPLFHQMTAVQQRSALDWWSLFYQKAE HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GKRFLSALSGRDRQLADLLNSAEPVPNGWGRILLAACSLLPGQKGRYYSCKKMLAEHFSQ HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH ICPNEFQKENASLEEPFDTSPPSL HCCHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MIPDVSIIVPCYNVAAYVDSCLESLVRQTLRNIEIICINDGSTDETWTHLLRWKEKDSRI CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCCEE ILLNQRNAGVSAARNAGLDAARGLYVGFADPDDYMDPEMYSRLFSAALEYDADIVECGNH EEEECCCCCCHHHHHCCCHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCH VFEDSSDRIIEAKRRSPSRHFEENASPASFFRDSIWGKMDICVWSKLFRKSMLDAHRLRF HHCCCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEE NVHLKSGAEDETFRLMAVPHASRLLFIPDCLYYYRLMRNGSLSRRCNVPTYSKCVQEFQR EEEECCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH LLYIVDYWQKQGWQNEGLFAYGVRKIRPFFVSKHPLFHQMTAVQQRSALDWWSLFYQKAE HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GKRFLSALSGRDRQLADLLNSAEPVPNGWGRILLAACSLLPGQKGRYYSCKKMLAEHFSQ HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH ICPNEFQKENASLEEPFDTSPPSL HCCHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]