Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187735163
Identifier: 187735163
GI number: 187735163
Start: 772777
End: 773577
Strand: Direct
Name: 187735163
Synonym: Amuc_0657
Alternate gene names: NA
Gene position: 772777-773577 (Clockwise)
Preceding gene: 187735162
Following gene: 187735164
Centisome position: 29.01
GC content: 61.8
Gene sequence:
>801_bases ATGAAAACGACCAAGACACCTGATCACAATCCGACCGGACGCACCCGTCCGAAACGCAAAATGGGCACCGTACTCCGCGC CAAACTCAGCAAATACCGCGCCCGCGTCTCCGAATTTGAAGATGACGCGCCCAGCAGCACCGTCGTGCGCTGGCTCGTCG TCCTTCTTCTTCTTCACCTTCTCGTCATCGGCGGCGTTTACGTCCGCAGCACCTGGTTCAGAAACACGGCGGAAACCGTA GAAATGGCAGCCGCCCTGCCCGCGCCGCCCACCGTCCCGCAACGCCCCGCTCCCGCAGCGCCCCCGGCCGCTCTGCCCCA GGTTCCCCAGGCCCCCCCCGCAGCCCCGGTCACCATCACGCAGCCGGAACAGGTAGTGGACGCTCGCCCCAACAGGCAGC CGGCCCCTGCGGTGGAGGAACACATTCCGGATGCAGCCCCGGTGGCAGGTCCTGCGCGCCACATCGTGCGCACGGGAGAT ACCTGGGAACGCGTCGCGCGTGACAACCAGGTGGCCGTCAATGACCTGAAAGCCGTCAATCCCAAAGTGCAGCGCCTTGT CAGCGGAAGCACGCTCGTCATTCCGGCCCGGCCAGGAGACAAATTTGAACCGGAAAAGTCCGCCGCGGAGGAATTGGAGC CGGAAGGCGTGCCCCACATTGTGAAGAAAGGGGAAACCCTCTCCGTAATCGCCCGCAAATACAAAATGAACTGGCGCACC CTTCAGAAATTCAACAAGATGAATGACCGGGACGTAGCGCGTCTCAAAATCGGGCAAAAAATCATGATCCCCAAAAAGTA G
Upstream 100 bases:
>100_bases TTGACATGTTCACCGGTTATGTTCAGCGCGGCCAGGCCTTCAGGGACGCGGTGAACGCCCTTCCCCCCCTTTCCTGACAA TTCACCAGAAAACGACCATC
Downstream 100 bases:
>100_bases GCCTCTTCCTGCCCTTCCGCCGCCATGTCTTCCAAAGTCTGCATGATTCTGGTCTGGTTTTTCGTCATCTGCCTTCTGGT CGTAGGCCTGGTGATGGTAT
Product: Peptidoglycan-binding LysM
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 266
Protein sequence:
>266_residues MKTTKTPDHNPTGRTRPKRKMGTVLRAKLSKYRARVSEFEDDAPSSTVVRWLVVLLLLHLLVIGGVYVRSTWFRNTAETV EMAAALPAPPTVPQRPAPAAPPAALPQVPQAPPAAPVTITQPEQVVDARPNRQPAPAVEEHIPDAAPVAGPARHIVRTGD TWERVARDNQVAVNDLKAVNPKVQRLVSGSTLVIPARPGDKFEPEKSAAEELEPEGVPHIVKKGETLSVIARKYKMNWRT LQKFNKMNDRDVARLKIGQKIMIPKK
Sequences:
>Translated_266_residues MKTTKTPDHNPTGRTRPKRKMGTVLRAKLSKYRARVSEFEDDAPSSTVVRWLVVLLLLHLLVIGGVYVRSTWFRNTAETV EMAAALPAPPTVPQRPAPAAPPAALPQVPQAPPAAPVTITQPEQVVDARPNRQPAPAVEEHIPDAAPVAGPARHIVRTGD TWERVARDNQVAVNDLKAVNPKVQRLVSGSTLVIPARPGDKFEPEKSAAEELEPEGVPHIVKKGETLSVIARKYKMNWRT LQKFNKMNDRDVARLKIGQKIMIPKK >Mature_266_residues MKTTKTPDHNPTGRTRPKRKMGTVLRAKLSKYRARVSEFEDDAPSSTVVRWLVVLLLLHLLVIGGVYVRSTWFRNTAETV EMAAALPAPPTVPQRPAPAAPPAALPQVPQAPPAAPVTITQPEQVVDARPNRQPAPAVEEHIPDAAPVAGPARHIVRTGD TWERVARDNQVAVNDLKAVNPKVQRLVSGSTLVIPARPGDKFEPEKSAAEELEPEGVPHIVKKGETLSVIARKYKMNWRT LQKFNKMNDRDVARLKIGQKIMIPKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29313; Mature: 29313
Theoretical pI: Translated: 10.95; Mature: 10.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTTKTPDHNPTGRTRPKRKMGTVLRAKLSKYRARVSEFEDDAPSSTVVRWLVVLLLLHL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LVIGGVYVRSTWFRNTAETVEMAAALPAPPTVPQRPAPAAPPAALPQVPQAPPAAPVTIT HHHCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC QPEQVVDARPNRQPAPAVEEHIPDAAPVAGPARHIVRTGDTWERVARDNQVAVNDLKAVN CCHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHCCCCHHHHHHHHCC PKVQRLVSGSTLVIPARPGDKFEPEKSAAEELEPEGVPHIVKKGETLSVIARKYKMNWRT HHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHH LQKFNKMNDRDVARLKIGQKIMIPKK HHHHHCCCCCHHHHHHCCCEECCCCC >Mature Secondary Structure MKTTKTPDHNPTGRTRPKRKMGTVLRAKLSKYRARVSEFEDDAPSSTVVRWLVVLLLLHL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LVIGGVYVRSTWFRNTAETVEMAAALPAPPTVPQRPAPAAPPAALPQVPQAPPAAPVTIT HHHCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC QPEQVVDARPNRQPAPAVEEHIPDAAPVAGPARHIVRTGDTWERVARDNQVAVNDLKAVN CCHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHCCCCHHHHHHHHCC PKVQRLVSGSTLVIPARPGDKFEPEKSAAEELEPEGVPHIVKKGETLSVIARKYKMNWRT HHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHH LQKFNKMNDRDVARLKIGQKIMIPKK HHHHHCCCCCHHHHHHCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA