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The map label for this gene is araC [C]

Identifier: 183222284

GI number: 183222284

Start: 3032296

End: 3033402

Strand: Reverse

Name: araC [C]

Synonym: LEPBI_I2935

Alternate gene names: 183222284

Gene position: 3033402-3032296 (Counterclockwise)

Preceding gene: 183222285

Following gene: 183222283

Centisome position: 84.27

GC content: 33.06

Gene sequence:

>1107_bases
GTGGAAACAGAATCGATCACACTTAATGTATTATTAGAGTTTTTGTGGATGGGCTCTGGTGCAATCTTTTGTATCATCTG
GTCCTTGTCCAATTTAGTCAACAATCGTAAAAAATCAGATTTTGTTTGGTCATTCATCCTGTTTTCGACAGGCTTATGGC
TGTTAACAGGTGCATTTATGTTTACGGGGTTTTATTTGTATTTCCCTTTGATTGTTTTTATCCATATCCCATTTGTATTT
TTATCTGCTTCGTTTTTGTATTATTATTTAGAATTTTTATTTTTAGAAAAACAAATCAAGTTCCATTGGATTGGTTTTTT
ACCCACAGTCATCGCCATCGTTTTATTAATTCCTTATTATTTAGAATCCAATGAAGAAAGGATTCACATTCTTCAGTCAT
TACAAAGCTCGGAGTATGGATCTGTTTTGAGTGGACTCAATTTTGGAATCAAACTATCAATCCTATTGTCTGTTGGTGTT
TTTCTCATCCGAGAATGGATTCCCAATGTGATGTTGTCTGTTTTTTTTACCAAACGTGCCATTTATTCTCTTATTTTTAT
CCTTTTGGTTTGGTTGGATTTATTGATTGGAAGTATAGGGTTTAGTTTTCAATTACCATTCTTTCGAAAACTGAGCGCAT
ACCTTTTGCCGATCTTGATGTATTTTTATTATTTCACTCGTGAATTATGGGAACCATTTGTATCGGATGTTAGAGACAAT
ATCCAAAAAAACAAATATGAAAAATCTAAATTGGTTTCGGTTCCATTAGAAATAATCGATCAAAAATTATACGAACTTAT
GCAAGAAAAAGTGTTTTGCGATGAAGACTTAAATCTTTCCAAACTGGCAGAGATGGTAGGTGTAAAGTCAGGTCAATTAT
CAGAATACTTTCACAAACGATATGGATTCGGTTTTTATCATTATATCAACCAATACAGAATCGAAGAAGCAAAACGTTAT
TTATTGGAACCAACAGAACGGACGATTCTTTCCATTGCCGACTCGGTTGGCTTTAATTCAAAGTCTACTTTTAACCGAGT
TTTTTTAGAAAAGGTAGGTATCACTCCAACCGATTTTCGAAAACAATCCAAACAAACAAAATCATAA

Upstream 100 bases:

>100_bases
AAATCACAACTGATCTTATGAAAATGTTAACGGATATTTTGGGAAAGGGAGCAGTTCGTTACACAGTAGGGGAAGAAGTG
AGAGTATACGGGTAAATTCT

Downstream 100 bases:

>100_bases
ACATCCTAAGTCTCAAAGAATTCTAGAGGACGACAAAAGTTTTTCCATCGGTTACTCTTTGTTCAAAAGAGGAATATGAA
TGCGAACCATGATAGATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC Family Transcription Regulator; Transcriptional Regulator Arac Family; Two-Component Response Regulator; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulator AraC Family Domain Protein; Helix-Turn-Helix AraC Type; Transcription Regulator

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
METESITLNVLLEFLWMGSGAIFCIIWSLSNLVNNRKKSDFVWSFILFSTGLWLLTGAFMFTGFYLYFPLIVFIHIPFVF
LSASFLYYYLEFLFLEKQIKFHWIGFLPTVIAIVLLIPYYLESNEERIHILQSLQSSEYGSVLSGLNFGIKLSILLSVGV
FLIREWIPNVMLSVFFTKRAIYSLIFILLVWLDLLIGSIGFSFQLPFFRKLSAYLLPILMYFYYFTRELWEPFVSDVRDN
IQKNKYEKSKLVSVPLEIIDQKLYELMQEKVFCDEDLNLSKLAEMVGVKSGQLSEYFHKRYGFGFYHYINQYRIEEAKRY
LLEPTERTILSIADSVGFNSKSTFNRVFLEKVGITPTDFRKQSKQTKS

Sequences:

>Translated_368_residues
METESITLNVLLEFLWMGSGAIFCIIWSLSNLVNNRKKSDFVWSFILFSTGLWLLTGAFMFTGFYLYFPLIVFIHIPFVF
LSASFLYYYLEFLFLEKQIKFHWIGFLPTVIAIVLLIPYYLESNEERIHILQSLQSSEYGSVLSGLNFGIKLSILLSVGV
FLIREWIPNVMLSVFFTKRAIYSLIFILLVWLDLLIGSIGFSFQLPFFRKLSAYLLPILMYFYYFTRELWEPFVSDVRDN
IQKNKYEKSKLVSVPLEIIDQKLYELMQEKVFCDEDLNLSKLAEMVGVKSGQLSEYFHKRYGFGFYHYINQYRIEEAKRY
LLEPTERTILSIADSVGFNSKSTFNRVFLEKVGITPTDFRKQSKQTKS
>Mature_368_residues
METESITLNVLLEFLWMGSGAIFCIIWSLSNLVNNRKKSDFVWSFILFSTGLWLLTGAFMFTGFYLYFPLIVFIHIPFVF
LSASFLYYYLEFLFLEKQIKFHWIGFLPTVIAIVLLIPYYLESNEERIHILQSLQSSEYGSVLSGLNFGIKLSILLSVGV
FLIREWIPNVMLSVFFTKRAIYSLIFILLVWLDLLIGSIGFSFQLPFFRKLSAYLLPILMYFYYFTRELWEPFVSDVRDN
IQKNKYEKSKLVSVPLEIIDQKLYELMQEKVFCDEDLNLSKLAEMVGVKSGQLSEYFHKRYGFGFYHYINQYRIEEAKRY
LLEPTERTILSIADSVGFNSKSTFNRVFLEKVGITPTDFRKQSKQTKS

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43304; Mature: 43304

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METESITLNVLLEFLWMGSGAIFCIIWSLSNLVNNRKKSDFVWSFILFSTGLWLLTGAFM
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
FTGFYLYFPLIVFIHIPFVFLSASFLYYYLEFLFLEKQIKFHWIGFLPTVIAIVLLIPYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LESNEERIHILQSLQSSEYGSVLSGLNFGIKLSILLSVGVFLIREWIPNVMLSVFFTKRA
HCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYSLIFILLVWLDLLIGSIGFSFQLPFFRKLSAYLLPILMYFYYFTRELWEPFVSDVRDN
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQKNKYEKSKLVSVPLEIIDQKLYELMQEKVFCDEDLNLSKLAEMVGVKSGQLSEYFHKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
YGFGFYHYINQYRIEEAKRYLLEPTERTILSIADSVGFNSKSTFNRVFLEKVGITPTDFR
HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHH
KQSKQTKS
HHHCCCCC
>Mature Secondary Structure
METESITLNVLLEFLWMGSGAIFCIIWSLSNLVNNRKKSDFVWSFILFSTGLWLLTGAFM
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
FTGFYLYFPLIVFIHIPFVFLSASFLYYYLEFLFLEKQIKFHWIGFLPTVIAIVLLIPYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LESNEERIHILQSLQSSEYGSVLSGLNFGIKLSILLSVGVFLIREWIPNVMLSVFFTKRA
HCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYSLIFILLVWLDLLIGSIGFSFQLPFFRKLSAYLLPILMYFYYFTRELWEPFVSDVRDN
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQKNKYEKSKLVSVPLEIIDQKLYELMQEKVFCDEDLNLSKLAEMVGVKSGQLSEYFHKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHH
YGFGFYHYINQYRIEEAKRYLLEPTERTILSIADSVGFNSKSTFNRVFLEKVGITPTDFR
HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHH
KQSKQTKS
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA