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The map label for this gene is rbpA1 [H]

Identifier: 183222158

GI number: 183222158

Start: 2898749

End: 2899012

Strand: Reverse

Name: rbpA1 [H]

Synonym: LEPBI_I2801

Alternate gene names: 183222158

Gene position: 2899012-2898749 (Counterclockwise)

Preceding gene: 183222159

Following gene: 183222155

Centisome position: 80.54

GC content: 34.09

Gene sequence:

>264_bases
ATGTCAACAAACATCTATGTAGGAAACCTATCGTACGAAATGACGGAAACTAAATTAAACGAACTTTTTTCAGTTCATGG
CGCAGTTTCATCAGCAAAAATCATTACTGACCAGTATACTGGCGGTTCAAAAGGTTTTGGTTTTATCGAAATGAAAGACC
GAAATGAAGCTGATAAAGCAATTAGCGATCTAAACGGAAAAAACATTTTAAACCGTGAAATGAAAGTGAATATTGCAAAA
CCAAAAACAAACAACTGGAACTAA

Upstream 100 bases:

>100_bases
CCCTGCATTTTCGTTGTTGTTTTTACCTAAATTCCTTACCGGAAAGTCGTTTCTAATCCATTAAATTTTCAGAGTCAAAT
TAAACTAATAAGGACATCAC

Downstream 100 bases:

>100_bases
TCATTTCAATTTTGTTTTGAATGGAATAGGCTAATGAAACTTCTTCTATATTGAAGGGATTCATTAGCTTGTTCTTTTTT
TATACCTCTCTCATTTCCCA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MSTNIYVGNLSYEMTETKLNELFSVHGAVSSAKIITDQYTGGSKGFGFIEMKDRNEADKAISDLNGKNILNREMKVNIAK
PKTNNWN

Sequences:

>Translated_87_residues
MSTNIYVGNLSYEMTETKLNELFSVHGAVSSAKIITDQYTGGSKGFGFIEMKDRNEADKAISDLNGKNILNREMKVNIAK
PKTNNWN
>Mature_86_residues
STNIYVGNLSYEMTETKLNELFSVHGAVSSAKIITDQYTGGSKGFGFIEMKDRNEADKAISDLNGKNILNREMKVNIAKP
KTNNWN

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=81, Percent_Identity=38.2716049382716, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI4557493, Length=81, Percent_Identity=38.2716049382716, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI221139802, Length=77, Percent_Identity=42.8571428571429, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI49355761, Length=81, Percent_Identity=39.5061728395062, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI49355765, Length=81, Percent_Identity=39.5061728395062, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI46367787, Length=80, Percent_Identity=36.25, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI283945537, Length=81, Percent_Identity=38.2716049382716, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI283945529, Length=81, Percent_Identity=38.2716049382716, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI115511032, Length=81, Percent_Identity=38.2716049382716, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=39.5061728395062, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17569937, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI212648574, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=36.25, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32564506, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32564504, Length=79, Percent_Identity=41.7721518987342, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17531965, Length=79, Percent_Identity=41.7721518987342, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531963, Length=79, Percent_Identity=41.7721518987342, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=35.5263157894737, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17537143, Length=79, Percent_Identity=40.5063291139241, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193209459, Length=84, Percent_Identity=36.9047619047619, Blast_Score=62, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=84, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=46.0526315789474, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=39.5061728395062, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI45553910, Length=80, Percent_Identity=37.5, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9704; Mature: 9573

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNIYVGNLSYEMTETKLNELFSVHGAVSSAKIITDQYTGGSKGFGFIEMKDRNEADKA
CCCCEEEECCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHH
ISDLNGKNILNREMKVNIAKPKTNNWN
HHCCCCCCEECCEEEEEEECCCCCCCC
>Mature Secondary Structure 
STNIYVGNLSYEMTETKLNELFSVHGAVSSAKIITDQYTGGSKGFGFIEMKDRNEADKA
CCCEEEECCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHH
ISDLNGKNILNREMKVNIAKPKTNNWN
HHCCCCCCEECCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]