| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is rsbU [H]
Identifier: 183221828
GI number: 183221828
Start: 2542516
End: 2544405
Strand: Reverse
Name: rsbU [H]
Synonym: LEPBI_I2459
Alternate gene names: 183221828
Gene position: 2544405-2542516 (Counterclockwise)
Preceding gene: 183221829
Following gene: 183221827
Centisome position: 70.68
GC content: 33.65
Gene sequence:
>1890_bases ATGTTGATGAAACAGATATTGATTTTTTTATTTTTCTCTTTTTCTATATCCGCTGAAGTGGTGTCCCTTGATTCTCGATG GACTTTCCAGTCAGAGGGAGAAAAATTTCCAAAACAAATCAAAGTAGGCGTTCTATTAATCGAACAAGGTTACAAAGTGC CACTCCGTGGTAAATACCATCTGATTCTTCCCATCGACCAACTACCTGAAACTTCCATTTCCGTTTATTTGGATCGTGTT CACTCTGCAGACAATACTTATTGGAATGGTAAATTAATTGGGACGACTGGCGGTTTATCACCGAATTATTATCCATATTG GCATAAGGTAAGGTATTACGAAATACCAAACTCCTTAGTTTTGTTAGGTGAAAATCATTTAGAAGTAGAAATCGAATGTA GGGAAACCGAATTTCGTTGTGGTTTATTTCGATCCATTCCGCTATTCGGTTCCCAAAATGAAATTAAGGACAAAATGATT TATGAGGATGTGAATCAAATCGTAATGGCCGCCTTATTCTTTGGGATTTTTTTGCAACAAGCAATTGGATATGCTCTCAA CCGTTCCTCCAAATCTGGATTATATTTAGCAGGCACTGCAATTTTTTTTGTATGTTGGCGCCTACCTGTTTTAAATAAAA TCCATTTTTTAGGAATTCACCCAGAAATTTTAGTACGATTATTATTCTTTTGCCAATTTATTTTTCCCGTTTTCATTATG TTATTCGTACATACATTGATTGATCGTAAGATTACGAAAATTGCATTTATCACTTTTTTATTTGATACTATATTGGCATT GATCCAATTATTCGAACTAAATCCAGATGTAAGATTTTATTTTGTATATATTTGGTATATTTTACTCGGAATAAAAGTTC CCATCTTAGTGCAGTTACTTGCTAAAAATTATAAAAAATCTTCTGAAGCAATTGTTGTATCCATTGGTGCCCTCGTTGCA ACTTTTTTTGGAATAGCGGATGTTTTAACCGATGTAATTACGGGGAAAAATGCATATTTAACTCAATATGGGATCTTAAG TTTTTTGTTTTCGGGAGTTCTTGCCATCGCCTTACAAAGTTCTAGAACCAAAAAAGAATTACGGAATTTAAACGAATCTC TGGAGATGATTGTAACACTTAGAACACAAGAACTTCAAAAACAATACAAACTGTTACATGATGATTTGGTAATGGCTGCT AGTTTACAATCCAAGTTAATTCCACCGATGGAATTTCAATATGCAAGATTAAACGTAGCATCTATGTTTATGCCGATGGA AAAAATTGGTGGAGATTACTTTGATTATTACATACATGAAGATGGATCATTAACATTTTTGTTATGTGATGTTTTGGGAC ATGGAATTGCTGCAGCACTTATCGCAAGCATGTTAAAAGTAAATTTTTTAGAAATTGCACCGAAAATCAAAGATCCATCT TTGTTTCTAAAAGAAATTAATTTAAAAATTTTACCTGTGATTGAAAAAAATTATATTACAGCAGTCGCTAGTCATTTTGA TCTTAAAAATCAAATTTTACGATATTCGGTAATGGGGCATCCGAGTCCATTCCATCTCAATTTGAAAGATAACAGTTTAG AGACCTTAGGTGGTAGGGGTCCCATCATGGGCTGGAAAAAAGAAGTTCAATTGGATACCTATAAGATACCCCTGCGCACT GGTGATCGGTTCTTTTTTTATACGGATGGAATTACCGAAAGTCATAGTCGGGAAAAGGAAATGTTCGGAGAAACCCGATT ACGTAATCAACTTTTAGAAGGAAATGCGTTATCTCCTAAAGAATTAAATGAAAAAATCAAAAAGGAGATCAAAAAATTTA CTTTTCGATTGTCAGATGATGTAACATACTTTACGATCGATTTCTTATGA
Upstream 100 bases:
>100_bases TTCTCTATTTTACGAGTGGACTTAGAATTCCTCTGGTCAAAGGAAGTATTGTTTCGTCCCATCCAAACTTTTATTCCAAA CAAAGGAATTGTCTGACACT
Downstream 100 bases:
>100_bases AATTTGTATTCAATTCTATTGGAATACGTTTTCTCTTAAACTTAGGAGTTAACAATCAATTAGATTTACAAACTTCCGTT AGAGTCCAATTAGCAAACTT
Product: putative serine phosphatase RsbU
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MLMKQILIFLFFSFSISAEVVSLDSRWTFQSEGEKFPKQIKVGVLLIEQGYKVPLRGKYHLILPIDQLPETSISVYLDRV HSADNTYWNGKLIGTTGGLSPNYYPYWHKVRYYEIPNSLVLLGENHLEVEIECRETEFRCGLFRSIPLFGSQNEIKDKMI YEDVNQIVMAALFFGIFLQQAIGYALNRSSKSGLYLAGTAIFFVCWRLPVLNKIHFLGIHPEILVRLLFFCQFIFPVFIM LFVHTLIDRKITKIAFITFLFDTILALIQLFELNPDVRFYFVYIWYILLGIKVPILVQLLAKNYKKSSEAIVVSIGALVA TFFGIADVLTDVITGKNAYLTQYGILSFLFSGVLAIALQSSRTKKELRNLNESLEMIVTLRTQELQKQYKLLHDDLVMAA SLQSKLIPPMEFQYARLNVASMFMPMEKIGGDYFDYYIHEDGSLTFLLCDVLGHGIAAALIASMLKVNFLEIAPKIKDPS LFLKEINLKILPVIEKNYITAVASHFDLKNQILRYSVMGHPSPFHLNLKDNSLETLGGRGPIMGWKKEVQLDTYKIPLRT GDRFFFYTDGITESHSREKEMFGETRLRNQLLEGNALSPKELNEKIKKEIKKFTFRLSDDVTYFTIDFL
Sequences:
>Translated_629_residues MLMKQILIFLFFSFSISAEVVSLDSRWTFQSEGEKFPKQIKVGVLLIEQGYKVPLRGKYHLILPIDQLPETSISVYLDRV HSADNTYWNGKLIGTTGGLSPNYYPYWHKVRYYEIPNSLVLLGENHLEVEIECRETEFRCGLFRSIPLFGSQNEIKDKMI YEDVNQIVMAALFFGIFLQQAIGYALNRSSKSGLYLAGTAIFFVCWRLPVLNKIHFLGIHPEILVRLLFFCQFIFPVFIM LFVHTLIDRKITKIAFITFLFDTILALIQLFELNPDVRFYFVYIWYILLGIKVPILVQLLAKNYKKSSEAIVVSIGALVA TFFGIADVLTDVITGKNAYLTQYGILSFLFSGVLAIALQSSRTKKELRNLNESLEMIVTLRTQELQKQYKLLHDDLVMAA SLQSKLIPPMEFQYARLNVASMFMPMEKIGGDYFDYYIHEDGSLTFLLCDVLGHGIAAALIASMLKVNFLEIAPKIKDPS LFLKEINLKILPVIEKNYITAVASHFDLKNQILRYSVMGHPSPFHLNLKDNSLETLGGRGPIMGWKKEVQLDTYKIPLRT GDRFFFYTDGITESHSREKEMFGETRLRNQLLEGNALSPKELNEKIKKEIKKFTFRLSDDVTYFTIDFL >Mature_629_residues MLMKQILIFLFFSFSISAEVVSLDSRWTFQSEGEKFPKQIKVGVLLIEQGYKVPLRGKYHLILPIDQLPETSISVYLDRV HSADNTYWNGKLIGTTGGLSPNYYPYWHKVRYYEIPNSLVLLGENHLEVEIECRETEFRCGLFRSIPLFGSQNEIKDKMI YEDVNQIVMAALFFGIFLQQAIGYALNRSSKSGLYLAGTAIFFVCWRLPVLNKIHFLGIHPEILVRLLFFCQFIFPVFIM LFVHTLIDRKITKIAFITFLFDTILALIQLFELNPDVRFYFVYIWYILLGIKVPILVQLLAKNYKKSSEAIVVSIGALVA TFFGIADVLTDVITGKNAYLTQYGILSFLFSGVLAIALQSSRTKKELRNLNESLEMIVTLRTQELQKQYKLLHDDLVMAA SLQSKLIPPMEFQYARLNVASMFMPMEKIGGDYFDYYIHEDGSLTFLLCDVLGHGIAAALIASMLKVNFLEIAPKIKDPS LFLKEINLKILPVIEKNYITAVASHFDLKNQILRYSVMGHPSPFHLNLKDNSLETLGGRGPIMGWKKEVQLDTYKIPLRT GDRFFFYTDGITESHSREKEMFGETRLRNQLLEGNALSPKELNEKIKKEIKKFTFRLSDDVTYFTIDFL
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 72334; Mature: 72334
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLMKQILIFLFFSFSISAEVVSLDSRWTFQSEGEKFPKQIKVGVLLIEQGYKVPLRGKYH CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCCEE LILPIDQLPETSISVYLDRVHSADNTYWNGKLIGTTGGLSPNYYPYWHKVRYYEIPNSLV EEEECCCCCCCHHHHHHHHHHCCCCCEECCEEEEECCCCCCCCCCCEEEEEEEECCCCEE LLGENHLEVEIECRETEFRCGLFRSIPLFGSQNEIKDKMIYEDVNQIVMAALFFGIFLQQ EEECCCEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIGYALNRSSKSGLYLAGTAIFFVCWRLPVLNKIHFLGIHPEILVRLLFFCQFIFPVFIM HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHH LFVHTLIDRKITKIAFITFLFDTILALIQLFELNPDVRFYFVYIWYILLGIKVPILVQLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHH AKNYKKSSEAIVVSIGALVATFFGIADVLTDVITGKNAYLTQYGILSFLFSGVLAIALQS HHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC SRTKKELRNLNESLEMIVTLRTQELQKQYKLLHDDLVMAASLQSKLIPPMEFQYARLNVA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SMFMPMEKIGGDYFDYYIHEDGSLTFLLCDVLGHGIAAALIASMLKVNFLEIAPKIKDPS HHHHHHHHHCCCEEEEEEECCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHH LFLKEINLKILPVIEKNYITAVASHFDLKNQILRYSVMGHPSPFHLNLKDNSLETLGGRG HHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCHHHCCCCC PIMGWKKEVQLDTYKIPLRTGDRFFFYTDGITESHSREKEMFGETRLRNQLLEGNALSPK CCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH ELNEKIKKEIKKFTFRLSDDVTYFTIDFL HHHHHHHHHHHHHHEEECCCEEEEEEEEC >Mature Secondary Structure MLMKQILIFLFFSFSISAEVVSLDSRWTFQSEGEKFPKQIKVGVLLIEQGYKVPLRGKYH CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCCEE LILPIDQLPETSISVYLDRVHSADNTYWNGKLIGTTGGLSPNYYPYWHKVRYYEIPNSLV EEEECCCCCCCHHHHHHHHHHCCCCCEECCEEEEECCCCCCCCCCCEEEEEEEECCCCEE LLGENHLEVEIECRETEFRCGLFRSIPLFGSQNEIKDKMIYEDVNQIVMAALFFGIFLQQ EEECCCEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIGYALNRSSKSGLYLAGTAIFFVCWRLPVLNKIHFLGIHPEILVRLLFFCQFIFPVFIM HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHH LFVHTLIDRKITKIAFITFLFDTILALIQLFELNPDVRFYFVYIWYILLGIKVPILVQLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHH AKNYKKSSEAIVVSIGALVATFFGIADVLTDVITGKNAYLTQYGILSFLFSGVLAIALQS HHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC SRTKKELRNLNESLEMIVTLRTQELQKQYKLLHDDLVMAASLQSKLIPPMEFQYARLNVA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SMFMPMEKIGGDYFDYYIHEDGSLTFLLCDVLGHGIAAALIASMLKVNFLEIAPKIKDPS HHHHHHHHHCCCEEEEEEECCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHH LFLKEINLKILPVIEKNYITAVASHFDLKNQILRYSVMGHPSPFHLNLKDNSLETLGGRG HHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCHHHCCCCC PIMGWKKEVQLDTYKIPLRTGDRFFFYTDGITESHSREKEMFGETRLRNQLLEGNALSPK CCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH ELNEKIKKEIKKFTFRLSDDVTYFTIDFL HHHHHHHHHHHHHHEEECCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]