Click here to switch to the map view.

The map label for this gene is hycD [C]

Identifier: 183221791

GI number: 183221791

Start: 2494475

End: 2495353

Strand: Reverse

Name: hycD [C]

Synonym: LEPBI_I2422

Alternate gene names: 183221791

Gene position: 2495353-2494475 (Counterclockwise)

Preceding gene: 183221792

Following gene: 183221790

Centisome position: 69.32

GC content: 35.49

Gene sequence:

>879_bases
ATGGAAATGATTGTTTATTTTGCTTATTTAGTTATATTATTTTTTTGCCTTCCTTTTTTATTAACAGGGATTGTTCGGAA
GGTAAGAGCCTTTGCGCAAGGTAGAAGGGGACCTAAGTTAATCCAGTTTTTTTGGGAAATAAATAAATCTTGGTTAAAGG
ATCCAGTTTTACATAATAACTTTTCATCCATTTCGAACTTGGCACCAAGGTTGGCTTTTTTCTCTTCACTCATGATTTGG
AGTATCATTTTGTTTGAATGGGCTCCCTTCATTTTAATTCCATTTTTTTTAGCAATGTATCGTTTTTCATATATTGGATT
TGCTATGGAAGGAGCAACATCATTTGGTGGGATGGCTTCTGGTCGTGAAATATTACTATCAGTGATGGTTGAACCAACTT
TTATTTTGATGATATTAGCTGCTCAGTCTCACATTGAAATTTCAGAAACTCCACAAGGACTTCTAATCGGATTTTTATTC
TTGATACTTTCGTTTATTGCAATACTTGCTGAATTAGCAAAACCTCCCTTTGATGACCCAAGGACACACTTGGAGCTAAC
AATGGTTCATGAAGCCATGATATTGGAAGCATCAGGAAGACATTTGGCACTATTTGAGCTTTCGAGTTCCATAAAATTCT
CAGCTCTACTCACATTTTTAGTAAAACTGGCGTTAGAGCATTCCAAAATCTTTAAAAGCGGTATGATCACTGGAGTTAAT
CCTGAGTTTTTGATTTTCCCAATGGTGATTTTTTTGGCAATCGTGATGGGGTTTTGGGAAGCAAACAGTGTCCGCCGAAA
ATGGACTTGGATACCTGAATTCATGGGACTTACATTCATATCGATATTGATTTTAGGAACATTAGTAAAACTTTCTTAA

Upstream 100 bases:

>100_bases
AAGCTAAAGATGAGGATATAAGTAAATATTTGGCAATCTCATCAATGTTTCTGATCTTTATCTTTTCCTTGCTGATTTTG
GGCGATTTTTAGGTTATTTT

Downstream 100 bases:

>100_bases
GGATAAACTATGATTTATGATTTCATTTATTTATTATTGTTACTCACAGGAATTGTTATCCTAGTTGAAAATAGACTTAG
TCGTATCATTCTATTTCTCA

Product: hydrogenase-4 subunit D

Products: H2; oxidized ferredoxin [C]

Alternate protein names: NADH Dehydrogenase; Hydrogenase Membrane Subunit 3-Like Protein; NAD-Dependent Dehydrogenase Subunit; Formate Hydrogenlyase Membrane Subunit Subunit HyfD; Formate Hydrogenlyase Membrane Subunit; Hydrogenase Subunit C; Formate Hydrogenase Subunit C; Formate Hydrogenlyase Subunit 4-Like Protein; Hydrogenase-4 Subunit D

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MEMIVYFAYLVILFFCLPFLLTGIVRKVRAFAQGRRGPKLIQFFWEINKSWLKDPVLHNNFSSISNLAPRLAFFSSLMIW
SIILFEWAPFILIPFFLAMYRFSYIGFAMEGATSFGGMASGREILLSVMVEPTFILMILAAQSHIEISETPQGLLIGFLF
LILSFIAILAELAKPPFDDPRTHLELTMVHEAMILEASGRHLALFELSSSIKFSALLTFLVKLALEHSKIFKSGMITGVN
PEFLIFPMVIFLAIVMGFWEANSVRRKWTWIPEFMGLTFISILILGTLVKLS

Sequences:

>Translated_292_residues
MEMIVYFAYLVILFFCLPFLLTGIVRKVRAFAQGRRGPKLIQFFWEINKSWLKDPVLHNNFSSISNLAPRLAFFSSLMIW
SIILFEWAPFILIPFFLAMYRFSYIGFAMEGATSFGGMASGREILLSVMVEPTFILMILAAQSHIEISETPQGLLIGFLF
LILSFIAILAELAKPPFDDPRTHLELTMVHEAMILEASGRHLALFELSSSIKFSALLTFLVKLALEHSKIFKSGMITGVN
PEFLIFPMVIFLAIVMGFWEANSVRRKWTWIPEFMGLTFISILILGTLVKLS
>Mature_292_residues
MEMIVYFAYLVILFFCLPFLLTGIVRKVRAFAQGRRGPKLIQFFWEINKSWLKDPVLHNNFSSISNLAPRLAFFSSLMIW
SIILFEWAPFILIPFFLAMYRFSYIGFAMEGATSFGGMASGREILLSVMVEPTFILMILAAQSHIEISETPQGLLIGFLF
LILSFIAILAELAKPPFDDPRTHLELTMVHEAMILEASGRHLALFELSSSIKFSALLTFLVKLALEHSKIFKSGMITGVN
PEFLIFPMVIFLAIVMGFWEANSVRRKWTWIPEFMGLTFISILILGTLVKLS

Specific function: Unknown

COG id: COG0650

COG function: function code C; Formate hydrogenlyase subunit 4

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082115, Length=243, Percent_Identity=29.2181069958848, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 33225; Mature: 33225

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMIVYFAYLVILFFCLPFLLTGIVRKVRAFAQGRRGPKLIQFFWEINKSWLKDPVLHNN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHCCC
FSSISNLAPRLAFFSSLMIWSIILFEWAPFILIPFFLAMYRFSYIGFAMEGATSFGGMAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GREILLSVMVEPTFILMILAAQSHIEISETPQGLLIGFLFLILSFIAILAELAKPPFDDP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
RTHLELTMVHEAMILEASGRHLALFELSSSIKFSALLTFLVKLALEHSKIFKSGMITGVN
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PEFLIFPMVIFLAIVMGFWEANSVRRKWTWIPEFMGLTFISILILGTLVKLS
CHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEMIVYFAYLVILFFCLPFLLTGIVRKVRAFAQGRRGPKLIQFFWEINKSWLKDPVLHNN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHCCC
FSSISNLAPRLAFFSSLMIWSIILFEWAPFILIPFFLAMYRFSYIGFAMEGATSFGGMAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GREILLSVMVEPTFILMILAAQSHIEISETPQGLLIGFLFLILSFIAILAELAKPPFDDP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
RTHLELTMVHEAMILEASGRHLALFELSSSIKFSALLTFLVKLALEHSKIFKSGMITGVN
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PEFLIFPMVIFLAIVMGFWEANSVRRKWTWIPEFMGLTFISILILGTLVKLS
CHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton; reduced ferredoxin [C]

Specific reaction: Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA